| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3200 |
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| Symbol | |
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| ID | 4075304 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 195244 |
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| End bp | 196530 |
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| Gene Length | 1287 bp |
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| Protein Length | 428 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004709 |
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| Product | D-amino acid dehydrogenase small subunit |
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| Protein accession | YP_611436 |
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| Protein GI | 99078178 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0905906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.889782 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGCCAC CCGGCCCCTT ATCTGTACCA TTTCAGAGAG CCGTACCCAT GTCGCAGGAT
ATTGTTGTTA TTGGCGCCGG TATTATTGGC ATCAGCATTG CTGCTGAGTT GGTCCAGCAA
GGGCATCGCG TCCGGGTTCT GGATCGCAGC GGTGTGGCTG CGGAAACCTC CAAGGGCAAC
GCGGGTGCCT TTGCCTTTAC GGATGTGATG CCGCTGGCCA CGCCCGGCAT CATGCGCAAA
GCGCCAAAAT GGCTGCTCGA TCCGCTTGGC CCATTGTCGA TCCCGCCCCG CTACGCGTTG
AAAATCGCGC CATGGATGCT CCGGTTCTGG CGCGCCAGTT GGCGTGACCG TTTTGAGACC
TCTGTCGCGG CACAAAGTGC CCTCATGGAC CTGTCCAGAT CCGCGCTGGA GCGACAGATT
GCAACGCATG GCGCCGAACA TCTTATTCAG CGCGATGGAC AATTGCAGCT CTTTGAGGGG
GAGACCCAAT TTCGCGACAG CCTGCCCGGC TGGGAACTGC GCGGCCAGTA TGGGATCAAA
TATGACCTTC TGCGCAGCCC CGAGGAAATT GCCGAAATTC AGCCGGGACT TGATCGTCGA
TTTACCCATG CAGGATTCAC CCCCGATTGG ATCAACACGA CCGATCCTCA GATCTGGACA
GAGCATCTGG CCCAGAGCGT TGTGAACGCG GGGGGCGAGA TTGTGGATTG CGATATACAG
TCCATCTCAA CTGTCGGCGA CAGGGTCCAG CTGACGCACG ACGGCGGATC CCTTACTGCA
GACAAAGTCA TCGTCGCGGC TGGCGCTTGG TCCCACCATC TGGCGCGCAC GCTGGGGGAC
CGGATCCCGC TTGAGACCGA GCGCGGATAC AACACCACAT TGCCCGCTGG GGCCTTCGAC
GTGCGAACTC ATCTGACATT TGGCGCCCAC GGCTTTGTGG TCAGCCGGAT CAACGGCGGC
GTCCGTGTTG GAGGCGCTGT TGAACTTGGC GGGTTGAAAC TGCCACCCAA TTATCGACGC
GCCAAGATCC TGCTGGAGAA AGCCAAGCGC TTTCTGCCCG GCTTGGACAC CGCGGGCGGG
CGCCAATGGA TGGGGTACCG CCCCTCGATT CCGGACACTC TTCCGGTGAT CAGTCGCTCT
CCGAAGTCTG ACAATGTGAT TTATGCCTTT GGTCATGGGC ATTTGGGGCT GACACAATCC
GCCGCCACCG CCGAGCTTGT GCGGGATTTG ATCAACAAAA ACAGCAGCCC GATCTCGCTT
GATCCCTATC GGGCCAGCCG GTTCTAA
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| Protein sequence | MGPPGPLSVP FQRAVPMSQD IVVIGAGIIG ISIAAELVQQ GHRVRVLDRS GVAAETSKGN
AGAFAFTDVM PLATPGIMRK APKWLLDPLG PLSIPPRYAL KIAPWMLRFW RASWRDRFET
SVAAQSALMD LSRSALERQI ATHGAEHLIQ RDGQLQLFEG ETQFRDSLPG WELRGQYGIK
YDLLRSPEEI AEIQPGLDRR FTHAGFTPDW INTTDPQIWT EHLAQSVVNA GGEIVDCDIQ
SISTVGDRVQ LTHDGGSLTA DKVIVAAGAW SHHLARTLGD RIPLETERGY NTTLPAGAFD
VRTHLTFGAH GFVVSRINGG VRVGGAVELG GLKLPPNYRR AKILLEKAKR FLPGLDTAGG
RQWMGYRPSI PDTLPVISRS PKSDNVIYAF GHGHLGLTQS AATAELVRDL INKNSSPISL
DPYRASRF
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