Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_3157 |
Symbol | |
ID | 4075327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008043 |
Strand | + |
Start bp | 138037 |
End bp | 139032 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638004660 |
Product | ABC transporter related |
Protein accession | YP_611393 |
Protein GI | 99078135 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.161419 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCGC TGACCCTGAC CAATGTGAAC AAATCCTTCG GCAATGTGCA TGTCCTCAAG GACATCAACA TCGAGGTCGA TGAGGGCGAG TTCGTCGTCT TTGTCGGCCC CTCGGGCTGT GGCAAATCCA CCCTCCTGCG CACCATCGCG GGACTTGAGG ATGTGACCTC GGGCGAGGTG TGCATCGCGG GCGAGGTGGT CAACCAGACC CCGCCCTCCA AACGCGGCAT CGCCATGGTG TTTCAGTCTT ACGCGCTCTA TCCGCACCTC AACGTGCGCA ACAACATGTC GCTGGCGCTG AAACAGGCCA AGGAAAGCAA GGAAACCATC GAGGAACGCG TGGCCGAAGC CAGCCGTATG CTGAGCCTGG GCGATTACCT CGACCGCTTC CCGTCGGAAC TCTCGGGCGG TCAGCGCCAG CGGGTTGCCA TTGGCCGCGC CATTGTGCGC CACCCCAAGC TGTTCCTCTT TGATGAGCCG CTTTCAAACC TCGACGCGGC CCTGCGTATG AACACGCGGC TGGAGATCGC CAATCTCCAC GAACAACTGG GCGCAACGAT GATCTACGTC ACCCACGACC AGACCGAGGC GATGACCCTT GCGGATAAAA TCGTGGTGCT GCGCGATGGC CGTGTCGAAC AGATCGGCTC TCCGATGGAG CTTTATAACA ACCCGGCCAA TCAGTTTGTG GCGGGCTTCC TTGGCTCTCC GGCGATGAAC TTCCTGCCCG CTGCCCTGCT CGAAGATGGC AACCCCAACA CGCTTGGCGT ACGTCCCGAA GATCTCCGGT TGGATGACGC CGGCCTCCTC GAGGTGACGT CAAAGCATGT TGAACACCTC GGCGGTGACA CCAATGTCAT CGCGGATTGC CACGGCCACC AGATCACCCT GCGGCTCTTT GGGCAGCATG CCATCCGCAC GGGCCAGGGC CTGCGCCTGA GCATCGCCGA AGGCAAATCC TACGTCTTTG ACCCAAGCGG CGCGCGCCTC AGCTGA
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Protein sequence | MTALTLTNVN KSFGNVHVLK DINIEVDEGE FVVFVGPSGC GKSTLLRTIA GLEDVTSGEV CIAGEVVNQT PPSKRGIAMV FQSYALYPHL NVRNNMSLAL KQAKESKETI EERVAEASRM LSLGDYLDRF PSELSGGQRQ RVAIGRAIVR HPKLFLFDEP LSNLDAALRM NTRLEIANLH EQLGATMIYV THDQTEAMTL ADKIVVLRDG RVEQIGSPME LYNNPANQFV AGFLGSPAMN FLPAALLEDG NPNTLGVRPE DLRLDDAGLL EVTSKHVEHL GGDTNVIADC HGHQITLRLF GQHAIRTGQG LRLSIAEGKS YVFDPSGARL S
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