| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3116 |
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| Symbol | |
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| ID | 4074987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 88482 |
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| End bp | 89669 |
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| Gene Length | 1188 bp |
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| Protein Length | 395 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638004618 |
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| Product | succinyl-diaminopimelate desuccinylase |
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| Protein accession | YP_611352 |
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| Protein GI | 99078094 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
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| TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.210379 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAAAT TGTCCGCACC ACGCGCCCAA CATGCCGTCG ACCCTGTGGA ACTGACAGCC
GACCTTGTAC GCTGCCAGAC CGTGACCCCC GAGGAAGGTA GTGCGCTTAA GCTGCTAAGC
GCATTGCTGA GCGAGCATGG GTTTCAGTGT CAGCGCATTG ATCGCAACGG TATTCCCAAT
CTATTTGCGA TTTGGGGAGA GGACCGAAAT GGACGCACAT TCGGGTTTAA CGGTCATACC
GATGTCGTTC CGATAGGCGA TCCAAAAGAC TGGACCGTCG ATCCTTTTGG AGCAGAGATC
CGTGACGGCA TTCTCTACGG GCGCGGCTCA ACGGACATGA AATCAGGCGT TGCGGCCTTT
GCCGCGGCCG CCATCGAGTT TGTCAACGAA ACACCACCTG ATGGCCGCGT CATCATCGCG
ATCACAGGTG CCGAAGAAAC CGGCTCGCCC GACGGGACAC GAGCCATTGT CCAATGGATG
GAGGCCAATG ATATTCGGGC CGACCACTTT ATCGTGGGCG AACCGACGAG CCTTAAGTCC
ATCGGGGACG CAATAAAGAT CGGTCGCCGG GGAACGATCA CGGTCTTTCT GACCGTGACT
GGCGTGCAAG GCCATTCGGG ATACCCGGAA AAAGCGAACA ACCCGCTTCC TGCACTGGTC
GATCTTTTGC AAGGTTTCGG GCAGGCGGCC ATGGACGAAG GAACGGAATT TTTCGCGCCT
TCAACACTTG CGATCACGAC GATTGATACA GGCAATCCTG CACGCAACGT CATTCCTGCG
ACGTGCAAGG CGACCCTGAG CATCCGGTTC AACGACAAAT GGACCTCTGG GAAAGTCCTT
GACTGGGTGT CCAGGCATAC GCGCGCCGCC GAGGACAAGT TCGGTGTCAC GATCAGTGCC
GATCACTACC TGTCGGGAGA GTGTTTTTTC ACACCGCCCG GGGCTCTTTC AAAGCTGGTT
CAAGATGCCG TCGAACAGGA AACGGGACAA AGACCACAGA TGACGACCCT CGGCGGCAGT
TCCGATGCCC GCCACCTCTT CAAGCACTGC CCGGTAGTCG AGGTTGGTTT GACCGGCGAG
ACCTTGCACC AGGTGGATGA GCACGTCTCC GTGGCCGAAA TCAATGCGCT CAAGACCGTC
TACGGCAGAA TCTTACGGGA CTACTTCGGG TCGGAGGGCA AGATATGA
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| Protein sequence | MNKLSAPRAQ HAVDPVELTA DLVRCQTVTP EEGSALKLLS ALLSEHGFQC QRIDRNGIPN
LFAIWGEDRN GRTFGFNGHT DVVPIGDPKD WTVDPFGAEI RDGILYGRGS TDMKSGVAAF
AAAAIEFVNE TPPDGRVIIA ITGAEETGSP DGTRAIVQWM EANDIRADHF IVGEPTSLKS
IGDAIKIGRR GTITVFLTVT GVQGHSGYPE KANNPLPALV DLLQGFGQAA MDEGTEFFAP
STLAITTIDT GNPARNVIPA TCKATLSIRF NDKWTSGKVL DWVSRHTRAA EDKFGVTISA
DHYLSGECFF TPPGALSKLV QDAVEQETGQ RPQMTTLGGS SDARHLFKHC PVVEVGLTGE
TLHQVDEHVS VAEINALKTV YGRILRDYFG SEGKI
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