| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3108 |
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| Symbol | deoD |
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| ID | 4075555 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | + |
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| Start bp | 78483 |
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| End bp | 79187 |
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| Gene Length | 705 bp |
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| Protein Length | 234 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638004610 |
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| Product | purine nucleoside phosphorylase |
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| Protein accession | YP_611344 |
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| Protein GI | 99078086 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0813] Purine-nucleoside phosphorylase |
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| TIGRFAM ID | [TIGR00107] purine-nucleoside phosphorylase, family 1 (deoD) |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGACTGTGC ATATTGGCTC TCAAAAAGAT GATTTCGCCG AAACCGTCCT GCTTCCCGGC
GATCCCTATC GCGCCAAATG GGCAGCGGAG ACATTTCTAA GTGACGTGCG CCTCGTCAAT
GAGGTCCGCG GCATGCTGGG CTATACGGGC ATGTGGAACG GCCATCGGGT CTCGATCCAA
GGCAGCGGCA TGGGGATGCC ATCCCTGTCG ATCTATGCCA ATGAGCTGAT CCGGGACTTC
GACGCCCAGA CCTTGATCCG CATCGGGTCC TGTGGGGGCA TGCAGCCCCA CGTCAAGGTC
CGCGATGTGA TCATTGCGAT GTCGGCAACC AGTGTGAGCA CGCCGTCGCG CACGATTTTC
AGGGATGTGA ATTTCGCGCC GACCGCGGAC TGGACCCTGC TGCGCAACGC GGTCACCGCA
GCCGAGGCAC AGGGTCTGTC ACCGCATGTG GGCGGGATCT ACTCCTCTGA CACCTTCTAT
GACGAACGCC CTGATCTCAA CGAACAGATG GTCCGCCATG GTGTTCTTGG CGTGGAGATG
GAAGCGGCCG AGCTTTATAC GCTTGCCGCT CGCTACGGAC GCCGCGCCCT TGCGGTTCTG
ACCGTTTCCG ACCACCTGCA GACCGGCGAG GCCCTCCCGT CGGAAGAACG CGAACGCAGT
TTTGGAGAGA TGGTGGAAAT CGCCCTTTCT GCAGCGTTTG CATAA
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| Protein sequence | MTVHIGSQKD DFAETVLLPG DPYRAKWAAE TFLSDVRLVN EVRGMLGYTG MWNGHRVSIQ
GSGMGMPSLS IYANELIRDF DAQTLIRIGS CGGMQPHVKV RDVIIAMSAT SVSTPSRTIF
RDVNFAPTAD WTLLRNAVTA AEAQGLSPHV GGIYSSDTFY DERPDLNEQM VRHGVLGVEM
EAAELYTLAA RYGRRALAVL TVSDHLQTGE ALPSEERERS FGEMVEIALS AAFA
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