| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2989 |
|---|
| Symbol | |
|---|
| ID | 4078019 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 3154473 |
|---|
| End bp | 3156098 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638008318 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_614983 |
|---|
| Protein GI | 99082829 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1176] ABC-type spermidine/putrescine transport system, permease component I |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.263811 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.821949 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGATA CAACCGATAC CGGACCGGTC CTTGCTGCAG ATGGCACGCC GCTAAAGCGC
AGCCTTGCAC GGGCGCTCCG GATGCAGAAG ATGCGCGCGC TGGCATTGAT CGCCCCGCTT
CTGCTCTTCG TTCTACTGAC ATTCATCCTG CCGATCGGCG ACATGTTGTT TCGCTCGGTC
GAGAACAGCA TCGTTTCGGA GACGTTGCCG CGAACGACCG CAGCGGCGCA GTCTTATGAT
GCCGACAGCG GAGAAGCGCC GCCTGAATAT GCATTTGACG CGCTGGCCTA TGATCTGGTT
GTTGCTGCCG AGAAGAAGAT CCACACACGC GTGGGCTCGC GCCTGAACTA CGAGAACGCT
GGTATTTCTT CGCTGTTCCG CAAGGCTGGG CGCCGAGTCG ATGACATTGG CGAGGTCTAT
CTCGATCAGT TTGTCGACCT TGACCCCGCT TGGGAAGACC CTCAGGCACT GGTCGCGCTT
TTTGCCGACC CCAGCTGGGC CGCCTCTGCC GGTGGCGAAA ACGAAGCGCG GTTTGAGTAT
TCCTCTGTGG CTGGCGAGGC GCTGCCGGGA GCGACGGATG CCTATGCTGC ATGGGCGCGC
ACGATCCAAG AAGAAGATCA GGACAGCCCC ACCGAAGAAG AGCCATGGGC CCCGGTCTAT
ATGGCGCTCT ACAAGGATCT CGCGAAAAAT CCGGATGCGG CATCTGCATT TGAGGGTGAA
ACTGCCGCGC GGCTTGCAGC AGCAGCAGCA GCCATCCAGT CCCCGGACTG GGAGACCATG
TCCACGCGTG ATGCTTTCAT CAAAATCGAT GACGACTGGG CCGACCCCGA AGTTTGGCGC
ACGATCAAGA CCTACTCCAG TAAATACACC AATGGGTACT TCTTGAACGC GGCCGACTTC
CAGAAAGGTG AGGATGGCCC TGAGCTGCGC CCGGAACTTG AGCGCATCTA TGGCACACTC
TTTCTGCGCA CCATGATCAT GTCGCTGGCT ATCACCGTAA GCTGTATCGT GCTTGGCTAC
CCGGTGGCAT GGATTCTGGC GAACCTGCCG TCGCGCACCG CCAACGTCCT GATGATTCTC
GTCCTGCTGC CGTTCTGGAC CTCTCTGCTG GTGCGGACCT CTGCATGGAA AGTCATGCTG
CAGCAGCAGG GCGTCATCAA TGATGTTCTG GTCTGGCTTG GACTGGTCGC TGACGACGCG
CGTCTTGTGA TGATCAACAA CCAGTTTGGT ACAATTGTGG CGATGACGCA CATCCTTCTG
CCGTTCATGA TCCTGCCGAT GTATTCGGTG ATGCAGACGA TCAATCCGTC CTACCTGCGT
GCGGCCAAGT CCCTTGGCGC GACCAACTGG ACGGCCTTCT GGCGGGTGTA TTTCCCACAG
TCGGTGCCGG GTATCGGCGC GGGTTCGATT CTCGTCTTCA TCCTGGCCAT TGGCTACTAC
ATCACGCCGG AACTCGTCGG CGGTACCAAG GGCGTATTCA TCTCGAACCG GATCGCCTTC
CACATCTCGC AATCCCTCAA CTGGGGTCTT GCGGCGGCAC TCGGGACAAT CCTGCTGGTG
GTGGTTCTGG TGCTCTACTG GGCCTACGAC AAGATCGTCG GCATCGACAA CGTGAAGCTG
GGATAA
|
|---|
| Protein sequence | MSDTTDTGPV LAADGTPLKR SLARALRMQK MRALALIAPL LLFVLLTFIL PIGDMLFRSV
ENSIVSETLP RTTAAAQSYD ADSGEAPPEY AFDALAYDLV VAAEKKIHTR VGSRLNYENA
GISSLFRKAG RRVDDIGEVY LDQFVDLDPA WEDPQALVAL FADPSWAASA GGENEARFEY
SSVAGEALPG ATDAYAAWAR TIQEEDQDSP TEEEPWAPVY MALYKDLAKN PDAASAFEGE
TAARLAAAAA AIQSPDWETM STRDAFIKID DDWADPEVWR TIKTYSSKYT NGYFLNAADF
QKGEDGPELR PELERIYGTL FLRTMIMSLA ITVSCIVLGY PVAWILANLP SRTANVLMIL
VLLPFWTSLL VRTSAWKVML QQQGVINDVL VWLGLVADDA RLVMINNQFG TIVAMTHILL
PFMILPMYSV MQTINPSYLR AAKSLGATNW TAFWRVYFPQ SVPGIGAGSI LVFILAIGYY
ITPELVGGTK GVFISNRIAF HISQSLNWGL AAALGTILLV VVLVLYWAYD KIVGIDNVKL
G
|
|---|
| |