Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2988 |
Symbol | |
ID | 4078018 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 3153256 |
End bp | 3154362 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638008317 |
Product | polyamine ABC trasnporter, periplasmic polyamine-binding protein |
Protein accession | YP_614982 |
Protein GI | 99082828 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.106267 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.817563 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATTGC GTACACTGTC GGCTCTGGCC GCCACGACCG CACTTTGCGC GCCGATGGCA ATGGCTACCG AGATGGCCAA CGAAATGACC CTGGTGTCCT GGGGTGGTGC CTATCAAGAA AGCCAGCTGA AGGCCTATGT CGAGCCCTAT CTGGAAATGA ACCCCGACGT GACCGTGGTT TGGGATGAAA GCTCTGCCGA AGCGACCGCA AAAATGCGCG CAATGGCCGA AGCAGGTAAC ATCACCTGGG ACCTGGTCGA CGTTGTGGCA TCCGACGCGA TGCGTCTGTG CGACGAAGGT CTGGCGCTTG AGCTCGACCA CGACGAAGTT CTCGCGGCTG CACCCGATGG CACCTCCGCG TCCGACGACT TTGGCGACCT GCTGGTCTCC GACTGCTTCG TGCCGCAGAT CGTTTACTCC ACCACCTTTG GCTACCGCAC CGACTTGGTC GGCGACACGC CGCCGTCCTC TGTCTGTGAC GTGTTCGACC TCGAAGCCTA TCCGGGCAAG CGCGCGCTGC AGAAGCGTCC GATCGACAAC ATGGAGTGGG CTCTTTACTG CGATGGCGTC GCCAAAGACG AGATCTATGA CACCCTCAGC ACCGACGAAG GTGTGGCGCA GGCTCTGGCC AAGCTAGACA CCATCAAGGA CAGCGTCGTG TGGTGGACTG CTGGCGCGGA AACCCCGCAG CTGCTCGCCG ATGGCGAAGT CGTGATGGGT TCGACCTACA ACGGTCGTCT GTTCTCTGCG ATCGCAGAGC AGGATCAGCC GATCGGCATG CTCTGGGACA TGCAGTCCTT TGACCTCGAC GGTTGGGTTG TTCCGGCCGA CTTGCCTGCA GATCGCGAAG CCCGTGTTCT GGACTTCCTG AAGTTCGCAA CCGACACGCA GCGTCTGGCC GACCAAGCGA AGTACATCTC CTACGGTCCG GCCCGTGCGT CTTCCGCACC GCTGGTGGGC AAGCACGAAG AGCTGGGCAT CGACATGGCG CCGCACATGC CGACTGACCC GAACAACGCG ACCAACGTGC ACATCTATGA CTACGAGTGG TGGGCGGACA ACCGTGACGA TCTGGACGCA AAATTCCAGG CGTGGTTGGC GCAATAA
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Protein sequence | MKLRTLSALA ATTALCAPMA MATEMANEMT LVSWGGAYQE SQLKAYVEPY LEMNPDVTVV WDESSAEATA KMRAMAEAGN ITWDLVDVVA SDAMRLCDEG LALELDHDEV LAAAPDGTSA SDDFGDLLVS DCFVPQIVYS TTFGYRTDLV GDTPPSSVCD VFDLEAYPGK RALQKRPIDN MEWALYCDGV AKDEIYDTLS TDEGVAQALA KLDTIKDSVV WWTAGAETPQ LLADGEVVMG STYNGRLFSA IAEQDQPIGM LWDMQSFDLD GWVVPADLPA DREARVLDFL KFATDTQRLA DQAKYISYGP ARASSAPLVG KHEELGIDMA PHMPTDPNNA TNVHIYDYEW WADNRDDLDA KFQAWLAQ
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