| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2933 |
|---|
| Symbol | |
|---|
| ID | 4077084 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 3101671 |
|---|
| End bp | 3102390 |
|---|
| Gene Length | 720 bp |
|---|
| Protein Length | 239 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638008262 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614927 |
|---|
| Protein GI | 99082773 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG3411] Ferredoxin |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.350772 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.525072 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGTTT ATCTCTATCT GATTTCAGCC AATTACGTCA GCACAAAGCG GTTTGCGGCG
CTTTCGAGAC GGCTCGAAGA GCTTGCGCCC AAACCTGCGA TGGCCATTCG GCTGGAGGCA
GACGGGGTCG GGCTATGGCA AGCGCTGGAC ACACTCAGGG CGCGTGGTGC GCGCCGAATC
GACCTGCGTC CTGTGGGCCT TCCGTTTTCG CAATCACTGG AAAACTGGCT ACCGGGTGCG
GCGGGGGCAT GGTGCGCGCA GCAGAATGGC GTTCCCCCCG AAGTTTTCTT TGCGAGCAGC
CCCGAGCATG ACGACGACGT GATCCGGGCG GTTGCCAGCG CAGAGGTCTC GTTGCAGCGG
GTCGTGGATC GGCCCAGAGG CGAGATCGGC AAAGGCTGGG ATCTGCCCCC ACCGCATCAG
CACCATCTCC TGGTCTGTAC CGGTCCGCGT TGCCACCTCA AAGACGCACC GAACCTTGCG
GATCATCTCA AGTCGGAAAT CCGGCGCGCG GGGCTTGGGG ACAGCTGTCT GGTCACCACA
ACGGGCTGCG TCTTTCCCTG CAATGCGGGG CCGGTGATCG TGCATTATCC GCGCGGGGAT
TGGTATCGGG TTCCGGATCT CTCGGAGATC CAGCGTTTTG TCAAAACCGT CCTTGTGCAG
GGCGGTAGGC TTGAACATCT CATTTTCCAT CAAACGGGAG TCTCCCATGA AACTGCGTAA
|
|---|
| Protein sequence | MHVYLYLISA NYVSTKRFAA LSRRLEELAP KPAMAIRLEA DGVGLWQALD TLRARGARRI
DLRPVGLPFS QSLENWLPGA AGAWCAQQNG VPPEVFFASS PEHDDDVIRA VASAEVSLQR
VVDRPRGEIG KGWDLPPPHQ HHLLVCTGPR CHLKDAPNLA DHLKSEIRRA GLGDSCLVTT
TGCVFPCNAG PVIVHYPRGD WYRVPDLSEI QRFVKTVLVQ GGRLEHLIFH QTGVSHETA
|
|---|
| |