Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2797 |
Symbol | |
ID | 4076565 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 2958859 |
End bp | 2959806 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638008122 |
Product | transcriptional regulator |
Protein accession | YP_614791 |
Protein GI | 99082637 |
COG category | [K] Transcription |
COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.558867 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAGAAAT GGACAAATGA TCTTGCCACA GCGAGCCAGG TGGACATTCT CCTCTTTGAT GACTTTTCCG GTCATTGCCT CGCAAATACC GTGGAGCCGA TGCGTGCCGC CAATACGCTA GCAGGGCGCG AACTCTACCG GTGGCGATTT CTATCACTGA ACAGCAGCCG TGTCGTTTCA TCCTCCGGCA TGGAGGTGAC GGCCCATGCG CAACTGGCAG ACTGCCGCGG GGACATGCTG GCCGTGATGC CAAGCTACAA CTTTCTGCGC CATGATACGC CAGAAACCCG GCGCGCCCTC CGTGCTGCGG CCATGCGCTA TCGCGAGTTG GCGGGGCTGG ATACCGGTCC CTGGCTTCTG GCCGCAGCGG GCTTGCTGGA TGGGCGACGG GCAACCATTC ATTGGGACGA GTTGGAGCGG TTGGCGGAGG CCTACCCCGA CATTGACGTC CAGCGCAGCC GCTACGTGCT TGATGGGAAT AGGATCACCT GTACCGGCGC GCTCGCGGCG TTTGATCTGA TGCTGGAGCG GATCGGCATC GCTCATGGTC AAGCGCTGCG GCTGGAGGTT GCGGCCCTGT TTATGTCCAC CGAAGGCAGC GGCCCCACAC CGGAATCGAT GCTGGCACGC ACAAAGGTCG TGGCCCGTGC CGTCGGGGTG ATGCAAGCGC ATGTCGAGGA GCCGCTCTCG ATCCCGGAGA TCGCTCGGCA AATCGGCCGT TCGCGCAAGG ATCTTGAGGC ACGCATGAAA TCCGATCTGG GCGCCACTCC TGCAAAAGTC TATCGACGGC TGCGCCTCAT TCAGGCTCGA AAGCTCATAT TAGAGACTGA TATTGGCATC TCAGAGGTTG CGACCCGCAC CGGATATGAA AATCCGAGCG CGCTGACACG GGCTTTTCGA GTTGAATTCG GAACAACACC CCGCGCCCTG CGCGCCCCGA CCTCGTGA
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Protein sequence | MQKWTNDLAT ASQVDILLFD DFSGHCLANT VEPMRAANTL AGRELYRWRF LSLNSSRVVS SSGMEVTAHA QLADCRGDML AVMPSYNFLR HDTPETRRAL RAAAMRYREL AGLDTGPWLL AAAGLLDGRR ATIHWDELER LAEAYPDIDV QRSRYVLDGN RITCTGALAA FDLMLERIGI AHGQALRLEV AALFMSTEGS GPTPESMLAR TKVVARAVGV MQAHVEEPLS IPEIARQIGR SRKDLEARMK SDLGATPAKV YRRLRLIQAR KLILETDIGI SEVATRTGYE NPSALTRAFR VEFGTTPRAL RAPTS
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