| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2722 |
|---|
| Symbol | |
|---|
| ID | 4077029 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2865208 |
|---|
| End bp | 2866029 |
|---|
| Gene Length | 822 bp |
|---|
| Protein Length | 273 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638008047 |
|---|
| Product | two-component response regulator |
|---|
| Protein accession | YP_614716 |
|---|
| Protein GI | 99082562 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0784] FOG: CheY-like receiver
[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.625093 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGTCGACCT CTACCACAGG CCAGGCTCTG ACACTGTCGG ACGTGATTAC TCCGCATCTG
CCTTATCTGC GCCGTTATGC GCGCGCGCTC ACCGGGGCGC AGCAATCCGG TGATGCCTAT
GCGGCCTCGA CTCTCGAAGC GATCCTTGCC GATCCGTCTT GTTTTGATGC GCAGAGCGCA
GGCGGCAAGG TGGCATTGTT CAAAGTGTTT CACACTCTCT GGAGCAGCTC TGGTCAGCCG
GTGCTGGAGG CCGATGAAGG CCCCCGTGCG CGGGCGCTGC AGCATCTGTC CTCGCTGACG
GCAAACACCC GAGAGGCACT CTTGCTCAAT ACTGTCGAAG CCTTCTCTGT TGGCGAAGTG
GCTCTTATCA TGGATCTGTC TGAGAGCGAG GCTGCAGGAT TGATCCAGCT GGCCCGCGAC
GAGATGCAGC AATCCGTGAG CGGCAAGATC ATGATCATCG AAGACGAGGC CATCATCGCC
ATGGACCTCG AAGGCATCTG TTCCATGATG GGCCACGAGG TCACTGGGAT TGCGCGCACG
CGCAAGGCTG CGGTGAAACT GGGGCTCGAG GAAAAGCCCG ACCTGATCCT TGCCGATATT
CAGCTTGCCG ACAATTCAAG CGGCATCGAT GCGGTGGCGG ATCTTCTGGA GGAGCTGGGC
GACGTTCCGG TGATCTTTAT CACCGCCTTC CCGGAGCGTC TGCTGACCGG TGAACGTCAC
GAGCCCGCCT TTATGATCGC AAAGCCTTAT GTGCCCGACC AGGTGATCTC TGCGATCAGT
CAGGCGATGT TCTTTGCCTC GACCGATACG CTCACCAGTT AA
|
|---|
| Protein sequence | MSTSTTGQAL TLSDVITPHL PYLRRYARAL TGAQQSGDAY AASTLEAILA DPSCFDAQSA
GGKVALFKVF HTLWSSSGQP VLEADEGPRA RALQHLSSLT ANTREALLLN TVEAFSVGEV
ALIMDLSESE AAGLIQLARD EMQQSVSGKI MIIEDEAIIA MDLEGICSMM GHEVTGIART
RKAAVKLGLE EKPDLILADI QLADNSSGID AVADLLEELG DVPVIFITAF PERLLTGERH
EPAFMIAKPY VPDQVISAIS QAMFFASTDT LTS
|
|---|
| |