Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2690 |
Symbol | |
ID | 4077601 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2829620 |
End bp | 2831923 |
Gene Length | 2304 bp |
Protein Length | 767 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638008015 |
Product | hemolysin-type calcium-binding region |
Protein accession | YP_614684 |
Protein GI | 99082530 |
COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.969151 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTGCATT CGGCACGGAA GAGGCAACAT CGCCCCGGCT GCAGCGTGCT TGCCGTCAAA GCGCTGCCTG TTTCCATAGG CAAATGGTAT GAGTGCAAAC ACGAGATGAC GACTTATGTA GTACACGGGA CGAATTACAA CGATCCCTCA TTTTGGGCCT CCATCTCTGA AGGCAGCCCC GGCCATACGC TTGATTTCAC CGGGTTGCCG CCAAATTATG AAATCAACAT CAACGCCGAG GCCAAAACGA TCTCGATCTG GGACGGGACG TCTTGGTATA GTGTCGGCGA AAGCGGCAAC ACGGGCACCA ACGCCACTCT GGGTAGCCCC ACCCTTGTCG ATGATTTCAC TGTCATTCTG GCGAACAATT CAGACGACTA CATCGAAGGC TCTGACAACA ATGACAGCCT CACGGGCGGT ACCGGGAACG ATACCCTGTC CGGGGACCAA GGTGATGACA CCCTCAGAGG GGGTGACGGG GATGACTATC TAACCGGTGG TGAAGGCAAC GACAATATCG ACGGTGGCAC CGGCAATGAC ACCATCCGTG GCGACAATGC GTGGACGAAT ACCTCGTCAG GAGCCTCAGG CGCGAGCACA ACCCCCACGA CGTTGACCGT CACCAACTCG GCGGATGGCC CGATCGAGCT GTGGTGGATC GACGAGACCG GCACAGCCCA ATATTACGCC ACCCTTCAGC CCGGGGACAC CCGGAACCAG AGCACCTTTG AGGAGCATAA CTGGATTCTG CGCCACCCGG ATGGCTGGTA TCTGGAGTAT ATCGAGGGGG CTCCGAACCA GACTGTCAAT TTTGGCTCGG CCGGTTTGAA TGATACGGTC TACGCGGGCG CTGGAAATGA TCTCATCGAT GGGATGTACG GCGATGACCT TCTCTACGGG GAGGGGAACA ATGACACGAT CTATGGCGAT TACGGCTCCG ATACGATTTA TGGCGGGGCA GGTGACGATC TTCTGTACGG GGGGGATGGC GACGATACCC TGGCTGGCGG TACCGGATCC GACACGATGT ATGGAGGGGC CGGAAATGAC TCCATGGTGG GGTTCGATGA CGCCGATACC TTCATTCTCG AGGATGGTTT TGGCAATGAC ACCATCGTGG GCGGCGAAGG CGGCACCGAT GACGATTTTG TCGATCTCTC CAACCTGACC AGCGGGGTCA CCGTCACCTA TACCGGCGAT GAGGCCGGGA CCATCACGGA TGGCAGCAAC ACGGCGGAGT TCTCGGAGAT CGAGCGGATT CGACTCACGG ATCAGGCGGA TGTGCTGGAT GCAAGCGCCT CTTTGGTGGG GGTCGATGTG GACGCCGGGG CCGGTGCGGA CACGCTGACC GGCAGCGCGG GGGATGACAG TCTGACGGGG GGCACGGGGG ACGACCGCTT TGTCATGACC ACCTCCGGCG GCACCGACAC CGTAGGTGAT TTTGATCTCG GTGACGCCGA CCTAGATGGG TTCTACAACG ACCAGATCGA TGTCAGCGGC CTGTCCGGGG GCTCCGGGGC GGGCGGACTG GTGACACGCG CGGATGTGGT GGTGACGGAT GATGGTTCCG GCAACGCCCT TTTGACCTTT CCCAATGGCG AACAGCTGGT CCTGCAAGGG GTCGCACCGG CGCAGATCAG CTCGTATCAG CAGCTCTATG CTGCAGGTAT TCCCTGCTTC ACTCCCGGCA TCCGCATCGC AACTGCGCGT GGGGCCGTTC CTGTGGAGCA TATCCGCAAG GGTGACCTGC TGCAGACGGC GGACAATGGG TTTCAACCCG TGATCTGGAC CGGGCGGCGG GATCTCAGCG CTGCAGAGCT GCGCGCCCGG CCACATTTGA CCCCGCTCAG GCTGCGCCCC GGCGGGCCGC TTGCCAACGA TCGCCCATTG CTGGTTTCAC CGCAGCATCG TTTTATGCTC GGACGCGCGC GGCTGGGCGA TATGGACCAT CTGCACGAGG CTTTTGTGCG CACGCGGCTG CTGCAGAGCC TCGCGCCAGA GGATGTGACC CCCTGCAGGC CCGCAGCCGG GGTCAGCTAC ATTCACCTGA TGACCGAGGC GCATCAGGTG ATTTTTGCCG AAGGTGTTGC CACCGAAACC TTCTGGCCCG GCCCAGAGGC GCTGCGTGGC TTGTCCGAGG GCGACCGGCG CGAGCTGTTT GATCTCTTTC CCGAGCTGTT CCTTGCCGGC GGCCTCTGCG GCGGCACGGG GCGGCACTTT GTTGCCCGGG CCTATTGCCC ACTGGCGCGT GTTGATCTCA AACGTCGCGA CCTGCGGGCG CTGGGCGCGC GCTCCGCGGC CTGA
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Protein sequence | MLHSARKRQH RPGCSVLAVK ALPVSIGKWY ECKHEMTTYV VHGTNYNDPS FWASISEGSP GHTLDFTGLP PNYEININAE AKTISIWDGT SWYSVGESGN TGTNATLGSP TLVDDFTVIL ANNSDDYIEG SDNNDSLTGG TGNDTLSGDQ GDDTLRGGDG DDYLTGGEGN DNIDGGTGND TIRGDNAWTN TSSGASGAST TPTTLTVTNS ADGPIELWWI DETGTAQYYA TLQPGDTRNQ STFEEHNWIL RHPDGWYLEY IEGAPNQTVN FGSAGLNDTV YAGAGNDLID GMYGDDLLYG EGNNDTIYGD YGSDTIYGGA GDDLLYGGDG DDTLAGGTGS DTMYGGAGND SMVGFDDADT FILEDGFGND TIVGGEGGTD DDFVDLSNLT SGVTVTYTGD EAGTITDGSN TAEFSEIERI RLTDQADVLD ASASLVGVDV DAGAGADTLT GSAGDDSLTG GTGDDRFVMT TSGGTDTVGD FDLGDADLDG FYNDQIDVSG LSGGSGAGGL VTRADVVVTD DGSGNALLTF PNGEQLVLQG VAPAQISSYQ QLYAAGIPCF TPGIRIATAR GAVPVEHIRK GDLLQTADNG FQPVIWTGRR DLSAAELRAR PHLTPLRLRP GGPLANDRPL LVSPQHRFML GRARLGDMDH LHEAFVRTRL LQSLAPEDVT PCRPAAGVSY IHLMTEAHQV IFAEGVATET FWPGPEALRG LSEGDRRELF DLFPELFLAG GLCGGTGRHF VARAYCPLAR VDLKRRDLRA LGARSAA
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