Gene TM1040_2609 details

Gene Information

• Locus tag: TM1040_2609
• Symbol: rimM
• ID: 4077520
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ruegeria sp. TM1040
• Kingdom: Bacteria
• Replicon accession: NC_008044
• Strand: +
• Start bp: 2744391
• End bp: 2744906
• Gene Length: 516 bp
• Protein Length: 171 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 638007933
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_614603
• Protein GI: 99082449
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.740533
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.0121185
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAGCGATG TGAGTGAAGA TCTGATTTGC GTGGGCGCTC TGGCGGGGTC CTTTGGCGTG 
CGCGGCGAGG TCCGCCTCAA GAGCTTTTGC GCCAACGCGG AAGAGATCGA AGACTATTCC 
CCCCTCCTGG GCGCGGACGG TCAGACCCGC TACACGCTGG CGATCACCCG CGCGATCAAA 
GGCGGCTTTG CCGCCCGCAT CGTGGATGTC GAAACCAAGG AGCAGGCCGA TGCGCTGAAA 
GGCGTGCAGC TCTATGCGCC GCGCGACCGT TTGCCCTCGC TGCCCGATGA TGAGTTCTAC 
CACGCCGATC TGATCGGGCT TGAGGTCTAC GACACCGGCG GCACGCTCCT GGGGCGCGTG 
AAGGCGGTGC AGAACTACGG CGCGGATGAT CTCTTGGAAC TGCATGGTCC GGGGCTCTCG 
GCCACGGTGC TTCTGCCCTT TACCAAGGCG GCGGTGCCGA CGGTGGACCT CTCTCAGGGC 
CGCATCATCG CAGACCCACC AGCGGGCGTG TTTTAA 

 

Protein sequence

MSDVSEDLIC VGALAGSFGV RGEVRLKSFC ANAEEIEDYS PLLGADGQTR YTLAITRAIK 
GGFAARIVDV ETKEQADALK GVQLYAPRDR LPSLPDDEFY HADLIGLEVY DTGGTLLGRV 
KAVQNYGADD LLELHGPGLS ATVLLPFTKA AVPTVDLSQG RIIADPPAGV F