| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2445 |
|---|
| Symbol | |
|---|
| ID | 4076927 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2586837 |
|---|
| End bp | 2587604 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638007769 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614439 |
|---|
| Protein GI | 99082285 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.315917 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.587426 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATC TTATTCCCTT TCTCGCGCCG GCCGGATTCG TGCTCGCCTT CATCATTGCG
CTTATTGCAG GCACCATAAA AGGCCTTGTG GGCTTTGCCA TGCCCATGAT CATGGTCTCG
GGCCTAAGCT CCATCATGGC ACCGGACCTG GCTTTGGCAG GGCTGATTCT CCCCACGCTC
GTCACCAACG GGTTTCAAGC CCTGAAACAG GGACCGGCCG CCGCTTGGGC GTCGATGAAA
CGGTTTCGCA CATTCCTTCT TGTGGGGGGG CTCTTCTTGC TGATGAGTGC GCAACTGGTG
CGCCTGCTTC CGCCACAGGT GATGCTGCTC ATCATTGGTG CGCCAATCAC GCTCTTTGCG
TTGACGCAGC TGCTTGGAAA ACAGCTCGTT CTGCATGAAG CCTCGCGCCG GATGGAGATC
GGCATTGGCG CTTTTGCAGG GTTCATCGGT GGCTTTTCAG GTATTTGGGG CCCCCCGACC
GTGGCGTATC TCACCGCGCT CGGGACCGAG AAAAAGGAAC AGATGCGCAT TCAGGGCGTG
ATCTACGGCC TTGGGGCCGT TGTCTTGTTC TTTGCTCATA TCGGGTCTGG TGTGATGCGC
GGCGAGACCC TGCCTTTTTC CATTCTGATG ATAGTACCAG CACTCCTTGG CATGTGGGTC
GGCGGGCGGC TGCAGGATCG GATCGACCAG AAGACATTCC GCCGCGCCAC CTTGTTTGTG
CTGCTGATCG CGGGTCTCAA CCTGCTGCGC CGCGCCTGGG TGGGCTGA
|
|---|
| Protein sequence | MTDLIPFLAP AGFVLAFIIA LIAGTIKGLV GFAMPMIMVS GLSSIMAPDL ALAGLILPTL
VTNGFQALKQ GPAAAWASMK RFRTFLLVGG LFLLMSAQLV RLLPPQVMLL IIGAPITLFA
LTQLLGKQLV LHEASRRMEI GIGAFAGFIG GFSGIWGPPT VAYLTALGTE KKEQMRIQGV
IYGLGAVVLF FAHIGSGVMR GETLPFSILM IVPALLGMWV GGRLQDRIDQ KTFRRATLFV
LLIAGLNLLR RAWVG
|
|---|
| |