| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2309 |
|---|
| Symbol | |
|---|
| ID | 4078299 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2427681 |
|---|
| End bp | 2430245 |
|---|
| Gene Length | 2565 bp |
|---|
| Protein Length | 854 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 638007631 |
|---|
| Product | pyruvate phosphate dikinase |
|---|
| Protein accession | YP_614303 |
|---|
| Protein GI | 99082149 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
|---|
| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0606667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA CCCCGAAGTC CACTTTGATC ACCGCGACCG CACCGATCGC CAATCAGACC
CATGGCGGGC GGGCCAAGTG CCTGCAGCGG CTGGTTCGCT TGGAGCTACC GGTGCCGCAG
ACCGTGGCGC TCTCGTTTGA TGCGGTGCAT GAGATCGCCG AGGGCTACAT GGTGGATGTG
AACGCGATCC TTGCGGATCT GCGACCCGGC GCGCTTTTGT GTGTGCGGCC CTCCTCCGAG
GATCCCGACT GGGGCGGTCC CGGAGCGGTT TTGAACATCG GCATGAATGA CGCGCGCTAC
GTGGAGTTGA GCGACACGCT GGGACCGGCG GCGGCGGCGG CGCTCTATTT GCGGTTTGTG
CAGTCCTATG CGGTGCATGT GGCGCGGCTG GACCCGGATG TGTTTGAGGA CGTCGAGGAC
GGCGGCCCCG ATGCGCTGAG CGAAATGCTG CAGGCCTATG AGGCTGAGGC TGAAGAGCCG
TTCCCCCAAG ATCCGGGCGA GCAGCTGGCG GCGGTTCTGC GCTCCATGGC GCGCGCGTGG
GAGGGCACGT CCGCGCGGCT GTTGCGCGCC GCGAAAGGCG CGCCCGAAGA CGCGGGGCTG
GGTCTCATTG TGCAAGAGAT GGTGCCGGGG CTGGGGCAGG GTGAATGCGG TTCAGGCGTG
TTGCAGCTTG TGAATTCGCA GACCGGGCTG CCGCAGATCA CCGGACGCTA TCTGAGCCAA
AGCCAGGGGC GCGACGCGCT CGGGGTTGAT GCGGAGGCAA TCTATCTCGA GCAGGACGAA
CGCGGCCCCT CGCTTGAGGA GCTGGCGCCC GAGGCCTTTG CCGAGTTGAA GGCCCATGCG
GCGCTGATGC GTAGAAAACT GCGTGCCGAA ATGCAGGTGG AATTCGTCAT CGAAAATGGC
CGTGTGCATA TTCTCGACGG GGTGCGGGTA CCACGTTCTT CGCGCGCGGC GGTGCGGATT
GCGGTGCGGC TGGCAGAGGA CGGGATCATT CCCGCCGAAG AGGCGCTGAT GCGGGTGGAT
GCCTATTCGC TCAACGAATT GCTGCACCGC CAGGTGGACC CGAATGCCAA ACGGGACGTG
ATTGGCAGCG GCATTGCCGC AAGTCCGGGC GCGGCCACCG GGCGTCTGGT TTTCACCGCG
ACCGAGGCGC AGGCCAGCAA GTCGCGTGGC GAACCCTGCA TTCTGGCGCG ACGTGAGACT
TCGCCAGAGG ATGTGCGGGG CATGCATGCG GCTGCGGGTG TACTGACGGA AAAAGGCGGA
ATGACCAGCC ATGCGGCGGT GATTGGTCGC GGGCTGGGGC TGCCCTGTAT CGTGGGCGCG
TCGCGCCTGC GGTTCGACAG TCGGCGCAAA CAGCTGACGG CCCCGGATGG GCGAGTTTTC
AAGGCAGGCG AGATCATCAC CGTGGATGGC ACCTCGGGCG AGGTGCTTGC TGGAGAACCC
GCCATGGTCG AGGCCGCCGA GGATGATGCG CTGGTGACGT TGATGGCCTG GGCGGATGCG
GCGCGCGACA TTGCGATCCG CGCCAATGCC GACACGCCTG CCGATGCGCA GACCGCGCGC
AATTTCAACG CCGAGGGTAT TGGTCTGTGC CGGACCGAGC ACATGTTCTT TGATCCGGGT
CGCCTTACGG TGATGCGCGA GATGATCTTT GCCGAGACCT CTTCCGGGCG GGCGGCGGTT
CTGGCGCGTC TCCTGCCGAT GCAGCGCAAG GATTTTCGCG AGCTTTTCCG TATCATGGAA
GGTCTGCCGG TGTGCATCCG GCTGTTTGAC CCGCCATTGC ATGAATTCCT GCCCACCACC
ACTGCCGGAC AGCGCGAACT CTCCGAGGCT CTGGGCCTGC CGGTGAGCGA CGTGACACGC
CGGGTTGCGG AAATGGGGGA GTACAACCCC ATGCTGGGTC TGCGCGGCGT GCGTCTCGGG
GTGACGGTGC CCGAGATCTA CGACATGCAG GCGCGCGCGA TCTTTGAAGC CACGCTCGAG
GCCTCGCGCG ATGGGGCGCC AGTGGTGCCT GAGATCATGA TCCCGTTGGT GTCTGCCAAA
CGCGAAGTGG AACTGGTCAA GGCGCGTATC GATGCGGTGG CCGCAGCCGT GAAATCCGAG
CGCGGCGCCG ATTTCACCTA TCGGCTCGGT GTGATGGTCG AGACCCCACG GGCGGCCCTC
CGGGCCGATG AGATTGCCGC GCATACGGCC TTCATGAGCT TTGGCACCAA CGATCTCACG
CAGATGACCT ATGGTCTGTC GCGCGATGAT GCGGGACGGT TCATGTCGGC CTATGTGCAG
CAGGGCGTCT TTCCCGAAGA TCCCTTCCAT GTGCTGGATG TGGACGGCGT CGGAGAGCTG
TTGCAACTCG GGGTGCAGCG GGGGCGGATG GCGAAGCCCG AAATCACCCT GTCGATCTGT
GGTGAACACG GTGGCAATCC CGAATCAATC GCGTTTTGCC GCGAGGCGGG CTTTGATTAC
GTGTCTTGCT CGCCCTTCCG GGTGCCTGTC GCGCGGCTTG CGGCAGCACA ATTGGCGATC
GCGGATAAAA CCGGCCAAAT TGCGCCGACA TACATAAAAA ATTAA
|
|---|
| Protein sequence | MDTTPKSTLI TATAPIANQT HGGRAKCLQR LVRLELPVPQ TVALSFDAVH EIAEGYMVDV
NAILADLRPG ALLCVRPSSE DPDWGGPGAV LNIGMNDARY VELSDTLGPA AAAALYLRFV
QSYAVHVARL DPDVFEDVED GGPDALSEML QAYEAEAEEP FPQDPGEQLA AVLRSMARAW
EGTSARLLRA AKGAPEDAGL GLIVQEMVPG LGQGECGSGV LQLVNSQTGL PQITGRYLSQ
SQGRDALGVD AEAIYLEQDE RGPSLEELAP EAFAELKAHA ALMRRKLRAE MQVEFVIENG
RVHILDGVRV PRSSRAAVRI AVRLAEDGII PAEEALMRVD AYSLNELLHR QVDPNAKRDV
IGSGIAASPG AATGRLVFTA TEAQASKSRG EPCILARRET SPEDVRGMHA AAGVLTEKGG
MTSHAAVIGR GLGLPCIVGA SRLRFDSRRK QLTAPDGRVF KAGEIITVDG TSGEVLAGEP
AMVEAAEDDA LVTLMAWADA ARDIAIRANA DTPADAQTAR NFNAEGIGLC RTEHMFFDPG
RLTVMREMIF AETSSGRAAV LARLLPMQRK DFRELFRIME GLPVCIRLFD PPLHEFLPTT
TAGQRELSEA LGLPVSDVTR RVAEMGEYNP MLGLRGVRLG VTVPEIYDMQ ARAIFEATLE
ASRDGAPVVP EIMIPLVSAK REVELVKARI DAVAAAVKSE RGADFTYRLG VMVETPRAAL
RADEIAAHTA FMSFGTNDLT QMTYGLSRDD AGRFMSAYVQ QGVFPEDPFH VLDVDGVGEL
LQLGVQRGRM AKPEITLSIC GEHGGNPESI AFCREAGFDY VSCSPFRVPV ARLAAAQLAI
ADKTGQIAPT YIKN
|
|---|
| |