Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2035 |
Symbol | |
ID | 4077962 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2143723 |
End bp | 2144454 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638007353 |
Product | AraC family transcriptional regulator |
Protein accession | YP_614029 |
Protein GI | 99081875 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.854548 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACCGTC TCACGACCCT GATTGACCGC TTTCGGATGC GGGTGGTTCT GGCCGCGCGC GGGGCGGGCA ACCTTTGTGT GATGCAGCCG GAGGCAGGGC GTCAGATCCT TGTGTTCACC CCCGAAGGGT GGGTTGAGGA CACCGGGGCA GAGGGGGTCG GTCTGGCGCT GCGTGTGGAT TGGGACGGGG CGCATAATCC GCTTGTGGCG GCGCTGCCGC AGCGGGTGGA GGTGGATCTT GCCGAGGCCC CGGCCCTTGC GTCCGTGCTG GCCTTGTTGC GTCAGGAACG GGAGGCGCAC CGCTGTGGGG CGCAGTCTGT GGTTTCGAGC CTCGGTCAGG TCCTGATGGT GCGCCTCCTG CGCCATTTGA TCGAGGCCGG CACGGCAGCG CCCGGTCTCC TTGCGGGTCT CGCCGACCCT CGATTGGCCC GCGCGATTGT GGCGATGCAT GATGCGCCGG GGCGGAGCTG GACCACCTCG GATCTTGCGC AGGAGGCAGG ACTGTCGCTT TCGCGCTTTT CCGAGCTGTT CTCGGCGCAG ATGAACGAGA CCCCCATGGG GTATCTCAGG CGTTGGCGGC TGACGCTGGC GCGTCAGGAT CTCATCCGAG GCGACCGGGT TGAGGCCGTC GCGCGCCGCT ATGCCTACGA CTCGCCAGAA GGGTTTGCAC GGGCCTTTCG CAAATTCTAC GGCGTGGCCC CCGTTTCATT GCGGCAGAGC ACCGCGGCCT GA
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Protein sequence | MDRLTTLIDR FRMRVVLAAR GAGNLCVMQP EAGRQILVFT PEGWVEDTGA EGVGLALRVD WDGAHNPLVA ALPQRVEVDL AEAPALASVL ALLRQEREAH RCGAQSVVSS LGQVLMVRLL RHLIEAGTAA PGLLAGLADP RLARAIVAMH DAPGRSWTTS DLAQEAGLSL SRFSELFSAQ MNETPMGYLR RWRLTLARQD LIRGDRVEAV ARRYAYDSPE GFARAFRKFY GVAPVSLRQS TAA
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