Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2005 |
Symbol | |
ID | 4077462 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2110423 |
End bp | 2111313 |
Gene Length | 891 bp |
Protein Length | 296 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638007320 |
Product | LysR family transcriptional regulator |
Protein accession | YP_613999 |
Protein GI | 99081845 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATCATC TACCCCCTTT GCGCCTGCTT GTGACCTTTG AGGCGATCTC GCGTCACGGG TCGATGCGCG ATGCTGCGCA GCGGCTCAAT GTGACCCAAC CGGCGGTCAG TCAGGCGCTC AAGGCGCTGG AGGATCACGT GGGCGTGGCG CTCTTTGATC GCAGTGTGCG CCCGGCGCGT CTGACCGACG CCGGAGAGAT GCTCTCGCGG GCGGTACGCG AGGGGCTTGG CCGGATTGCG GCCACGCTCG AAGACATCCG TGCCCTGCAT GCCATTGGCG AACGGCAGGT AACGGTTTCA TGCACATTGG GCATGGCGAC CTATTGGTTG ATGCCGAAAT TGCCAATGTT TTATGCGGAC TACCCGGAGC TTACGGTCAA CGTGCAAGCC CCGGCAACCG ATCTTCCGGT GCTGAGCCCA GGGATAGATG TGGCGCTTCG CTATGGCCGG GGCGGCTGGC GCGAAGGGCG CACGGAGAAG CTCTTTGCTG AGGTGATCTG CCCGGTTGGC GCGCCGGCAC TGGTGGAGCG CCTTCTTGCG GAGGGCGCCA CATTGGCTGA GGCGCCGTTG ATCCATGTGC GCAATCCGCA CAATGACCAC TGGGCGGGTT GGGAAGATTA TCTTCAGGCT CGCGGTATTC AGCGTCCGCG CGGGGGCGGA CAGATCTTTA ACAATTACGT CCAGGCGGCG CAGGCGATCT ATGATGGGCG CGGGCTTATG CTGGGCTGGC GCTCGATCAC CGGTCAGGCG GAACGCGACG GCGCCCTCCG GGCCTGGCCC GATGGCGCGC TGGATCTCGG GACGAGCTAT TTTGTCACCA TGCCCACGAC GCCCTCGCAG GACACGCTTC TGTTTGTCGA TTGGGTCCGC AAGGCGGCCG CGACCGTCTA G
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Protein sequence | MDHLPPLRLL VTFEAISRHG SMRDAAQRLN VTQPAVSQAL KALEDHVGVA LFDRSVRPAR LTDAGEMLSR AVREGLGRIA ATLEDIRALH AIGERQVTVS CTLGMATYWL MPKLPMFYAD YPELTVNVQA PATDLPVLSP GIDVALRYGR GGWREGRTEK LFAEVICPVG APALVERLLA EGATLAEAPL IHVRNPHNDH WAGWEDYLQA RGIQRPRGGG QIFNNYVQAA QAIYDGRGLM LGWRSITGQA ERDGALRAWP DGALDLGTSY FVTMPTTPSQ DTLLFVDWVR KAAATV
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