| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1092 |
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| Symbol | |
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| ID | 4076325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1167440 |
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| End bp | 1170907 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638006396 |
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| Product | hypothetical protein |
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| Protein accession | YP_613087 |
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| Protein GI | 99080933 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGACA AAGGAAAACC ATATATCGTG GCCGCGCCGC CAGAGCCTGC GTCCGAAGCG
GGCGGCAACC GGGTGCAGGA GACTGGCGCG GGCGCGTCTG ACATGGGCCA GAACACGGCA
CAGCCCCGGC GCAACCGGTG GCGCCGCCGC CTTTGGAAAA GCACGGTCTG GACCCTGGCG
CTTTTGGCGG GGTTGACGGT TGCGGCCTGG GTGCTGCTCG ACAAGCGGCT GGATGCGCCC
GAGTGGCTGC GCAGCGAGGC CGAGCGGCGC ATCGAGCGCC ATTTGGGCGG GCTTCAGATT
GAGTTCGGTG AGATCGAGCT GGTGGTGCGC CGGGGCTGGC GGCCGCGTCT TTCGCTGCGC
GATGTGACGC TGTTTTATCC CGACGGCAGC CCGGCTGTGC ATCTGGAGGA CGCGCAGGCG
GCCTTGGCGA TGCGGCCCTT GCTGCGCGGG CAACTCCGGC CCAAGCTGAT TTCGTTGTCG
GGGCTGTTTG CGACCCTGGA AACGGGCAGC GACGGGGCGG TGGCGCTCAG TTTTTCGGAT
GGGGCGGCGC CGTTGCGGCA AGCGCGCAAC CTGCCGCAAC TCATCGAGGC CTGGGACCGT
CAGCTGGAAC TGCCGATCCT GTCGGCGGTG ACGCAGGTGG AAACGCAGGC GGTGACGCTC
AATTATATCG ACCGTCGGAT CGACCGCGCC TGGACGCTGG ATGGCGGCGC GGTTCTGTTG
TCGCGCAAGG GCGATCGTGT CAGCATCGAT GCGGGTTTCT CGGTGCTCAG CGGGCGCGAG
TATGCCAGCA CCGTGGAGGC CAACTACCAA TCCGACATCG GGGATACCGC AGCGGAATTT
GCGGTGGTGG TGGATCAGGT GCCCAGCAGT GACATCGCCA GCCAGAGCCC GGCCTTTGGC
TGGCTGGATG TGCTGCGTGC ACCCATTTCA GGCGCGCTGC GTGGTGCGGT CGACAGCGAG
GGCGCGTTGC GTCCGCTCAA TGCGAGCCTG CAGGTGGGGC GCGGTGTGAT CCAGCCCAAT
GACCAGCTCA AACCCATCCC CCTGCAATCG GCCGAGAGCT ATTTCACCTT TGATCCTGCG
CGTCAGGAGC TGGCCTTTTC GCGCCTCTCG GTGGAGAGCG GCTGGATCAG TGGCCAGATG
GAAGGCCGCG CCGAGCTGGT GGGCGTGCGC GACGGGCGGC TGACGCAGCT TGTGGGCCAG
CTGAGCTTTT CCGATCTCAA GCTCAACCCG CTGCGCCTTT ATCCTGAACC TCTGGCGTTC
TCCGGGGTGC AGGCCGATTT CCTTATGGAG CTGCAACCTT TCCGGCTGCG CCTTGGCGAG
GCGCTGGTGC AGCAGGGCGA GACCGACGTG CTGTTGCGTG GTGATGTGCG CGCGGGCGAA
ACAGGCTGGC ACTATGATCT CCAAGGCGCG GCGGATCGGC TTGATGTGGC GGTGGTCAAG
GAAATGTGGC CGCCCTCCGC CCCGCCAAAG CCGCGGGCGT GGTTTACAGA GAACGTGCTC
GCCGGAGACA TCCACGACGT GCAGTTTGCC CTGCGTGGGC GCGATGGGCA AAAGCCCTTT
GTGGCGCTGG ATCTTGGATT TCTGAACGGC GAGGTGCGGT TCAACAAGTT CTATCCGCCG
CTGACCCAAG CGGCGGGGCA GCTCAGTATC TATGGCCGGC GCCTGGTGGT GACGGCCACC
GAGGGCGGCG TGGACGCGGA TCTAGGCGGG CGGATGGATG TGGCAGGGAC TTCCTTCATC
ATCCCGGATA CGTCGCTCAA GGGCGACAAC AGCCTTGGGA TCCTGCGCGC CGAACTCGCG
GGGCCCGCGC TGGCGGCGCT GTCGCTTCTG GACCGCGAGC CCCTGTCGAT CCTGAGCAAG
GTGAACCTTC CGGTGGCGCT TGGCACGGGT GAGGTCGACC TGAGCGCAAC CGCTGCGATG
CCGCTCAAGA AAGGGGTCAA CGTCGCGGAG ATTGACTATC ACTACGCTGG CCAAATCAAG
CAGGCCCGCA GTGAGGTCCT GGTGCCGGGC TATCCGATCG AGTCCGAGGC GTTGCAGATC
TCGGGGGACA ATCACCATGT CACGGTGGCG GGGCCCGGCC TTTTTGCCGG TGTTCCAATC
GAGGCGCGCT GGCGTCAGGG TATCCGCCCC GGAAATGCAC CCGATGGCAC CATCGAGGCC
GAGATCGAAC TCTCGCCGCG CACCTTGGCG GCGCTCAACA TCGGGCTGCC CGAAGGCATG
GTGCGCGGGC AGGGGCAGGC GCAGGTCGAG GTGGTTCTGC CCCCCGGCGA GCCGGTCGCG
CTCTCGGTGC AAAGCGATCT ACGCGGCATT GGCCTGTCGC TGCCCGAGGT AGGCTGGCGC
AAGGCCGAAA ACAGCAGCGG CACACTCTCG TTTGAAACTG TACTGAGGGA CACGCCATCG
ATCGAGAGTT TTACCCTCGA GGCCAATGGC TTGCGCGCGG CCGGGCGGAT CACGGTAAAG
CCGGATGGCG GGCTGGATCA AGCGCAGTTC TCGGCCGTGT CGCTTGGAAA CTGGCTGTCG
GGGGCGGTGA CATTGCGCGG GCGGGGCGAC GCCACCCCTG CGCTGTCGAT GACCGGGGGC
TGGATCGACC TTGAGCGCGC GCCCTTTGAC AGCCGCGCGG AGGGCGGCTC TGGTGGCGGT
GGCAGCAATA CGCCGATCTC GCTGGCCATT GATCGGCTGC AAGTCACCAA GGAACTGGCG
TTGACGCGCT TTCAGGGGCG GTTTGACACG CTTGGCGGGT TCAACGGGGC CTTCAGCGGC
AACCTCAACA CGCTCACCCC GGTCGAAGGG GTGGTGGTGC CGCAGTCCGG GGGGCTGGCG
ATGCGGCTGC GCTCGGCGGA TGCGGGCGGG GTCTTTCGTG CGGCGCAGGT GATGCAGAAC
GGCTATGGCG GCAGTTTCGA GATGACCATG CTGCCGGCTT CAGATCCCGG CGAATATGTC
GGCCAGCTCC GCGTGAAGAA CATCCGTGTA AAACGCACCC CCGCCATTGC GGCGCTGATC
AACGCGCTCA GTCTTGTGGG GCTCTTTGAT GAGCTGTCGG GCCAGGGCAT CCTCTTTACC
GCGATGGAGG CCGATTTCCG CCTTGGGTCG CGCTATCTCA CGCTGGTGAA GTCCTCGGCG
GTGGGGCCGT CGATGGGGAT TTCGCTCGAT GGGGTCTATG ACCTCAGCAC CAGCCAGATG
AACATGCGCG GGGTGCTTTC GCCGATCTAT CTGGTCAACG CCATTGGCAG CGTGCTGACG
CGCAAGGGCG AGGGGTTGTT TGGATTCTCA TTCACCCTGA AGGGCAAGGC CGAGGACCCG
GTGGTGTCGG TGAACCCGCT TTCGGGCATC GCGCCGGGGT TCCTGCGCGA GATCTTTCGC
GGCGAGGCGC CACGGGCGCC CGGAGCGGCC CCCTTGCCGG AGGACGAGCA GAACCAGACC
GCCGAAGAGC TGCGCGAAGA ACGCGAGCGC CGCCGCGAGG CCCGCTAG
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| Protein sequence | MSDKGKPYIV AAPPEPASEA GGNRVQETGA GASDMGQNTA QPRRNRWRRR LWKSTVWTLA
LLAGLTVAAW VLLDKRLDAP EWLRSEAERR IERHLGGLQI EFGEIELVVR RGWRPRLSLR
DVTLFYPDGS PAVHLEDAQA ALAMRPLLRG QLRPKLISLS GLFATLETGS DGAVALSFSD
GAAPLRQARN LPQLIEAWDR QLELPILSAV TQVETQAVTL NYIDRRIDRA WTLDGGAVLL
SRKGDRVSID AGFSVLSGRE YASTVEANYQ SDIGDTAAEF AVVVDQVPSS DIASQSPAFG
WLDVLRAPIS GALRGAVDSE GALRPLNASL QVGRGVIQPN DQLKPIPLQS AESYFTFDPA
RQELAFSRLS VESGWISGQM EGRAELVGVR DGRLTQLVGQ LSFSDLKLNP LRLYPEPLAF
SGVQADFLME LQPFRLRLGE ALVQQGETDV LLRGDVRAGE TGWHYDLQGA ADRLDVAVVK
EMWPPSAPPK PRAWFTENVL AGDIHDVQFA LRGRDGQKPF VALDLGFLNG EVRFNKFYPP
LTQAAGQLSI YGRRLVVTAT EGGVDADLGG RMDVAGTSFI IPDTSLKGDN SLGILRAELA
GPALAALSLL DREPLSILSK VNLPVALGTG EVDLSATAAM PLKKGVNVAE IDYHYAGQIK
QARSEVLVPG YPIESEALQI SGDNHHVTVA GPGLFAGVPI EARWRQGIRP GNAPDGTIEA
EIELSPRTLA ALNIGLPEGM VRGQGQAQVE VVLPPGEPVA LSVQSDLRGI GLSLPEVGWR
KAENSSGTLS FETVLRDTPS IESFTLEANG LRAAGRITVK PDGGLDQAQF SAVSLGNWLS
GAVTLRGRGD ATPALSMTGG WIDLERAPFD SRAEGGSGGG GSNTPISLAI DRLQVTKELA
LTRFQGRFDT LGGFNGAFSG NLNTLTPVEG VVVPQSGGLA MRLRSADAGG VFRAAQVMQN
GYGGSFEMTM LPASDPGEYV GQLRVKNIRV KRTPAIAALI NALSLVGLFD ELSGQGILFT
AMEADFRLGS RYLTLVKSSA VGPSMGISLD GVYDLSTSQM NMRGVLSPIY LVNAIGSVLT
RKGEGLFGFS FTLKGKAEDP VVSVNPLSGI APGFLREIFR GEAPRAPGAA PLPEDEQNQT
AEELREERER RREAR
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