Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0962 |
Symbol | |
ID | 4077258 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1027874 |
End bp | 1030345 |
Gene Length | 2472 bp |
Protein Length | 823 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638006265 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_612957 |
Protein GI | 99080803 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5002] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGACAGA AGATACCGAT TATGCATCGC TGGGTTATTT CCGCAGCCGC CGTGGTTCTT ATACTGCTGG CGGCTCAGGC CTATCGTTTG GGAAGCGATG TTCAGTCGCG GATCGAAGCT CTGTCGAGCG CCGCAACCGA CAACCTTCAG TGGACTTTGT CACAGGCCGA GGTCGACTAT CTGAAATATC GCTCCGCCGC GATGGTGGTG GAAGATCGCA GCGATCTTCC ACGCCTTCGA CGCCAGTTCG ATATCTATTA CAGCCGCATC GCGACTTTTC GAGAAAGTGC GCTTTATTCG GAAGTGCGCG CCACCCCTGA AGGCAGTGAA ACGCTCGGGC GGCTGCAACA GGGGTTGCAG AGACAAGCGG CACTTATTGA CGCGTCTGAC GATGTTCTGC TCTCCGAGAA AGAGAATTTG CTGCAGCTGA TTGCCGTCGA TGGCAATGAT GTGCGCGATC TCGCGCTTTT TGGCGTGGCG CTACAGGCCG AGACGGCGGG CGCGGAGCGG GTTTTGCTGC ACACATTGTT CACCCGTCTT GCGATTGTGG TTCTGGCGCT TCTTGGGACG CTTGCGCTCA CTGCTCTGGT GATCCTGCGC CTGTTCCGGC GGGGGCAGCG GCTTTCGATG CTGCAGGCGC AGGAGGCCGC CCGCACAGAG GCGATGGTCA CATCTTCCCT CGATGCGATC CTAATGGCGG ATGCGGAGGG TCGCATCACC GCCATCAACG GCGCCGCTGA GGAGATTTTT GGCTACAGCG AAGAGGAGGC GATCGGGATG AATTTCGACT CGCTGATCCT GCAATCTCCC GAGGGTGCCG GGGCTGGCGA TCTTGACGAT TTTCTGAACG AGAACGATGG CCGGTTCCAG ATGACCGCCC AGAGGAAGAC CGGCGATGTG ATCCCGGTCG AAGTCTCATT GACGGTGAGC AAATCTGATG GAAATCAGGT ACTTGTCAGC TATGTGCGCG ACATTTCCCA TCGCCTGCAA GCCGAGGAAG AACTGCGCCG GGCACGCGAT GACGCGCTTG CAGGAGAACA GGCCAAAGAT CGCCTTCTGA CGGTGATGAG CCACGAGATG CGCACGCCGC TCACGGGTAT CCTTGGCTCG CTTGATGTGC TCGAGGGGCT GACGCCGAGC GCAGAGCAAC AGCGATACCT GCAGGCCATG CGGGTGTCGG GCGAGCTGCT GTTGCATCAC GTCAATGACG TCTTGCAGCT TTCGCGACTC GAATCCGGCG CCGAGGCGGA CGCGCCCATT CGCTTTGATC TCGACGAACT TGTGCGTGGC ATCGGGGAGA GCCAGCAGGC CAATGCGGCC CGCAACAACA ATGACTTAAG TGTATTCTGC AGCCTTGGCG CCGAAACCGG GGTCGAGGGG CATTGTCGTT ATGTGCAGCA GGTCCTGCTC AATCTCATCG GAAACGCGCT GAAGTTCACC CAGGATGGCG CTGTTTCGGT GGATGTGATG CGTACCGAAG GCGACCTGGT GGAATTCAGT GTCGCAGATA CCGGGAAAGG CATCGCAGCC GAGGATCTGG AACGCATCTT CGACGAATTC ACCATGGTAG ACCCCAATTA CAATCGCGGC TGCGAGGGTA CCGGTCTGGG GCTGGCGATT TCACGCCGGT TGGCCCGGTT GATGGGGGGA GAGATCACCT GCGAAAGCGA ACCGGGCGAG GGCAGCCTGT TTAGTTTCAC CATTCCCCTG CCGCCCGTCG CTCTGGAACA GGGCAAGCCG GTGTTTGCCG CCGATGCTCC AACCCGCCAG CAGCGCCTTC TAGTGATCGA AGATAACGAT ATCAACCGGT TGCTTCTCGA GACCATGTTG AACGACATGG GACATGAGGT GGTTTCCGTC AACGGCGGCG CGCGCGCTAT CGAGGAAATT CGCACCCACC GCTTTGATCT GATCATCTCG GACATCAGCA TGCCGGATAT CGACGGTATG GAAGTCTTGC GCCGCGTCCG TGCAGAGCAA CTCGCAAATG ATACCGACAT TGTTGCCCTG ACCGCTCATG CCGCGCGTGA CGATCACGAA CGCATCCTCG CCGCTGGCTT TGCAGAGGTG TTGACCAAGC CCATAGATCG CGCGGCGCTG GCCGAGATGG TGCTGCGGCG GTCCGCGGCC GATGCTGCGG CGCCCATTCC TGCGCAATAT CCGGGAGAGT CTGACATTTC TCAATTCGTC GCGGCCGTGG GGCCGGAGAA AGCGCGCCAT TTTCTCGCAG AGTTTCGCGA TGATGTCCGC GCTTTGCGTG AGGCCCTGAC CCAGAGCGTT GAATTGACCG ATCAGCACCG TAAGGAAGCT CATCGCCTCG CAGGGTCTGC CGCGGTGCTG GGGCTTGCGA CGCTGCGCAG CTCGATGCTC GAGATTGAGC AGGCGAATAC CAATGCTTTG CCCGAGTTGG CACCTCTGCA AGATGCCTGG GGCAACGCTG AAAAAGTCCT CGCGATCCAT GTGGCATCCT GA
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Protein sequence | MRQKIPIMHR WVISAAAVVL ILLAAQAYRL GSDVQSRIEA LSSAATDNLQ WTLSQAEVDY LKYRSAAMVV EDRSDLPRLR RQFDIYYSRI ATFRESALYS EVRATPEGSE TLGRLQQGLQ RQAALIDASD DVLLSEKENL LQLIAVDGND VRDLALFGVA LQAETAGAER VLLHTLFTRL AIVVLALLGT LALTALVILR LFRRGQRLSM LQAQEAARTE AMVTSSLDAI LMADAEGRIT AINGAAEEIF GYSEEEAIGM NFDSLILQSP EGAGAGDLDD FLNENDGRFQ MTAQRKTGDV IPVEVSLTVS KSDGNQVLVS YVRDISHRLQ AEEELRRARD DALAGEQAKD RLLTVMSHEM RTPLTGILGS LDVLEGLTPS AEQQRYLQAM RVSGELLLHH VNDVLQLSRL ESGAEADAPI RFDLDELVRG IGESQQANAA RNNNDLSVFC SLGAETGVEG HCRYVQQVLL NLIGNALKFT QDGAVSVDVM RTEGDLVEFS VADTGKGIAA EDLERIFDEF TMVDPNYNRG CEGTGLGLAI SRRLARLMGG EITCESEPGE GSLFSFTIPL PPVALEQGKP VFAADAPTRQ QRLLVIEDND INRLLLETML NDMGHEVVSV NGGARAIEEI RTHRFDLIIS DISMPDIDGM EVLRRVRAEQ LANDTDIVAL TAHAARDDHE RILAAGFAEV LTKPIDRAAL AEMVLRRSAA DAAAPIPAQY PGESDISQFV AAVGPEKARH FLAEFRDDVR ALREALTQSV ELTDQHRKEA HRLAGSAAVL GLATLRSSML EIEQANTNAL PELAPLQDAW GNAEKVLAIH VAS
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