| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0876 |
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| Symbol | |
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| ID | 4076246 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 934294 |
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| End bp | 934995 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006178 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_612871 |
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| Protein GI | 99080717 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.481499 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.345787 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCAGGGA GGGCCTCTGA TGAAGAACGC CAGACCGACA ACATCGGGAG ACAAGAGATG
AATGGCCCAA TCCGCGTTCT GATCGTCGAT GACCACCCGA TGGTCGCCGA AGGGATCCAG
TCGATCCTCG AAAGCTACGG CGACATCGAA GTGGTCGGGG CCGTTTCAAG CGGGCGTGAG
GCCATTGCCC GCGCCGAGGC TCTCGTGCCG GATGTCATCC TGATGGATCT CAACATGCCT
GATGTGGGCG GCCTTAGCGC GACCGAGATC ATTCAGGAAC GCTGCCCTGA AATCCGGGTG
CTGATCCTGT CGATGCACGA CAGCCCGGAA TATATCACCA CCGCCCTCAG CCACGGTGCG
GTTGGCTATG TTCTGAAGGA TGTCCAGCCC GAAGAAATCA AGACCGCAAT CGACGCGGTG
ATGCGCGGCG AACAATACCT GTGCACCGGC GCCGCCGGGT CGCTCTCGCC GCAATCCCAG
ACCAGCCGTG AAGCGCTCAC AGGGCGCGAG CAGACGATCC TCTTGGAACT GGCGCAGGGC
AAATCCAACA AGGAAGTGGC GCAAGCGCTC GATATTTCCG TGCGCACGGT GGAAACCCAC
CGCAAGAACA TCAAGCGCAA ACTTGGGATC TCTTCGACCG CGGGGCTCAC CCGCTATGCG
CTGGAACACG GTGTCCTGCA AGGCACCGGC CGCGGTATCT GA
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| Protein sequence | MPGRASDEER QTDNIGRQEM NGPIRVLIVD DHPMVAEGIQ SILESYGDIE VVGAVSSGRE
AIARAEALVP DVILMDLNMP DVGGLSATEI IQERCPEIRV LILSMHDSPE YITTALSHGA
VGYVLKDVQP EEIKTAIDAV MRGEQYLCTG AAGSLSPQSQ TSREALTGRE QTILLELAQG
KSNKEVAQAL DISVRTVETH RKNIKRKLGI SSTAGLTRYA LEHGVLQGTG RGI
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