| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0870 |
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| Symbol | |
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| ID | 4076240 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 927480 |
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| End bp | 928859 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638006172 |
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| Product | amidase |
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| Protein accession | YP_612865 |
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| Protein GI | 99080711 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0154] Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.555977 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTTTGCG ACAGAACGGC CAGCGACATT CTAAAAGACC TCGCCAGAGG CGCGCTCACG
GTCGAGGCCC TGATGCAGGC AACGCTCGAC CGCATTGGCG AACGCAACCC GGCGCTGAAC
GCGATTGTTG CCCTTCGCCC GACCGAGGAT CTGATGGCAG AGGCCCGCGC CGCGGATGCG
GTGCCACGGG CCGAACGCGG CCCGCTCCAT GGTCTGCCAA TGGCAATCAA GGATCTCTCG
AATGCCAAGG GGCTGGTGAC ATCCCAAGGC TCGCCGATTT TTGCAGGGCA GGTGGCACAA
GAGGACGATA TCTTTGTGGC GCGGTTGCGG GCGGCAGGGG TGATCGTGAT TGGCAAGACA
AATACGCCCG AGTTCGGGCT TGGGTCTCAC ACCTATAATC CTGTCTATGG CGCCACCGGC
AATGTGGTGG ACCCCAGCCG CTCTGCGGGC GGATCGTCAG GAGGCGCTGC GGTGGCGCTG
GCGGCGGGAA TGGTGGCGCT CGCGGATGGC TCTGACATGA TGGGCTCACT GCGCAACCCG
GCCGGATGGA ACGAGATCTA CGGCTTTCGT CCCACCTGGG GCTGGATCCC TTCCGAGCCC
GTGGGCGATG TGTTCCTGCA CCCGCTCTCA ACCAGTGGAC CGATGGCGCG CACGCCAGAG
GATCTGGCGC TTCTTCTGGA TGTGATGTCC GGCAGTGATC CGCGTTTGCC GCTCGCGCGC
GGTGCAGAAA CGGTCTCTCC GCTGAAGGCC CCAAAGCCAC TGCGGCTGGG CTGGCTTGGC
GATTGGGGCG GGGCTTACCC AATGGACGAC GGCCTCCTTG AGACCTGTGA TGCGGCGCTT
CAGACCTTTG TGGAGCAGGG CCACACGGTA GAGCGGATCG CGCCGCCATA TCCTGCAGAG
AAGATCTGGC AGAGCTGGAT CACCCTGCGC TCCTTTGCGG TGGCGGCGGG GCTTCGCGGG
TTGAACAACC GGCGCGCGGA TCTGAAAGAG GCAGCGCTCT GGGAGTTGGA CCGTGGGCTA
GGGTTCAGCG CGCAAGAGGT GCAGGAAGCC TCCGATCTGC GCTCGGGCTG GATGCGCGCG
GCTGCACGGA TGTTTCAGCG CTATGACGCG GTGGTGTTGC CCACTGCGCA ATGCTGGCCG
TTTCCGATCG ACTGGGACTA CCCAAAGGAG ATCGCCGGCA AACCCCTGGA CACCTACCAC
CGCTGGATGG AGGTGGTGGT GCCCGCAAGC CTGTTGGGAC TGCCTGCCTT GGCGGTGCCT
GCCGGGCGGG GCGGGGCGGA CCACTTGCCC ATCGGGCTGC AGATCATCGG CCCGCACGGC
AGCGACGGGC AGATCCTCGG GCTTGGGCAG GGATATCACA CCGCGCGCGC CGCGCTCTAG
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| Protein sequence | MLCDRTASDI LKDLARGALT VEALMQATLD RIGERNPALN AIVALRPTED LMAEARAADA
VPRAERGPLH GLPMAIKDLS NAKGLVTSQG SPIFAGQVAQ EDDIFVARLR AAGVIVIGKT
NTPEFGLGSH TYNPVYGATG NVVDPSRSAG GSSGGAAVAL AAGMVALADG SDMMGSLRNP
AGWNEIYGFR PTWGWIPSEP VGDVFLHPLS TSGPMARTPE DLALLLDVMS GSDPRLPLAR
GAETVSPLKA PKPLRLGWLG DWGGAYPMDD GLLETCDAAL QTFVEQGHTV ERIAPPYPAE
KIWQSWITLR SFAVAAGLRG LNNRRADLKE AALWELDRGL GFSAQEVQEA SDLRSGWMRA
AARMFQRYDA VVLPTAQCWP FPIDWDYPKE IAGKPLDTYH RWMEVVVPAS LLGLPALAVP
AGRGGADHLP IGLQIIGPHG SDGQILGLGQ GYHTARAAL
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