| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0845 |
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| Symbol | |
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| ID | 4076020 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 895892 |
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| End bp | 897502 |
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| Gene Length | 1611 bp |
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| Protein Length | 536 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638006143 |
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| Product | glucose-methanol-choline oxidoreductase |
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| Protein accession | YP_612840 |
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| Protein GI | 99080686 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.189337 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTGACT TTGACTATAT CATTGTGGGA GCCGGATCCG CGGGCTGTGT GCTGGCCGAG
CGCCTGAGCG CCAATGGCCG CCATAGTGTG CTTGTGCTGG AGGCCGGAGG TCGCCCGCGC
ACACCATGGA TCGCGTTGCC GCTTGGCTAC GGCAAGACCT TCTATGACCC GGCGGTGAAC
TGGAAATATC AGACTGAACC CGAAGAGACA CTGGGCGGAC GCGCCGGATA TTGGCCGCGT
GGCAAGGTCG TGGGGGGATC GGGTGCGATC AATGCGCTTG TCTACGCCCG TGGCCTGGCG
CGCGATTTCG ACGATTGGGA AGAGGCGGGC GCGACGGGCT GGAACTGGGA CGCGGTCCAG
AAAACCTATG AGCGCCTTGA GAGCCGCTTT GATGTCGATG GCACCCGCAC CGGCGAGGGG
CCGATTCACG TTCAGGATGT CTCGGACCAG ATCCACCGGG CCAACCGGCA TTTCTTTGCC
GCAGCGAAAG AGCTGGGTCT GCCACGGACA CCCGATATGA ACGGTATCAC CCCCGAAGGC
GCGGGCGTCT ACCGGATCAA CACCAGCGGT GGGCGCAGGA TGCATTCGGC GCGCGCCTGT
TTGGCTCCTG CGCTCCGGCG CGCAAATGTG ACGCTGATGA CGGGCGTTCT GGTGGAGCGG
ATCGGCTTTG AGGGAAAGCG GGCCACCTCC GTCGAGGTGG TCCACAAGGG GCGCGCGCAG
TCCTTGCAGG CCGGGCGAGA GATCATTCTC GCGGCAGGGG CTGTAAATTC ACCGCGCATC
TTGCAACTCT CGGGGCTTGG CCCCGCGGAG CTGCTGCGTG AGCATGGGAT CGCGCCGCTG
ATGGATGCGC CTCATGTAGG TGGCAACCTG CAGGATCATC TGGGCATAAA CTATTATTTC
CGTGCCACCG AACCCACGCT CAACAACGTG CTGAGGCCGC TCCATGGCAA GATCCGCGCA
GCGCTGCAAT ATGCGCTCAC GCGGCGCGGG CCGCTCGCGC TCTCGGTCAA CCAATGTGGT
GGATTTTTTC GCTCGGATGC GGGGCAGCGG GCGGCTGATC AGCAGCTTTA CTTCAACCCC
GTGACCTATA CCACCACACC GGACGGCAAA CGCACGGTGG TGCAGCCCGA CCCCTTTGCG
GGCTTTATCC TTGGGTTTCA GCCCACCCGG CCCATCAGCC GGGGGCGAAT CGACATTTCC
GCCGCCGACG CGCTTGCGCC GCCCCGGATC AGGCCGGACT CGCTGGCTGC TCAGGAAGAT
CAGGCGCAGG TGATCGCAGG CGGGCTGCTC TGTCAGAAGA TCGCCAAGAC CGAGGCGCTC
AGCCGCTTGA TCGCCGCGCC CATGGGCGAG GATCTGCGCG AGATGACACC GGAGCAGATC
CTAGCGGACT TTCGCGAGCG CTGCGGCACC GTGTTTCACC CGGTCGGCAC CTGTCGCATG
GGTGCAGACA GCACCAAGTC CGTGGTTTGC CCTCGGCTCA AGGTGCATGG GGTCGCGGGG
CTGCGGGTCG TTGATGCCTC GGTCTTCCCG AATATCACCT CGGGCAACAC CAACGCCCCA
ACCATGATGC TTGCCACCCG CGCGGCCGGT CTCATTCTGG AGGACGCATG A
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| Protein sequence | MRDFDYIIVG AGSAGCVLAE RLSANGRHSV LVLEAGGRPR TPWIALPLGY GKTFYDPAVN
WKYQTEPEET LGGRAGYWPR GKVVGGSGAI NALVYARGLA RDFDDWEEAG ATGWNWDAVQ
KTYERLESRF DVDGTRTGEG PIHVQDVSDQ IHRANRHFFA AAKELGLPRT PDMNGITPEG
AGVYRINTSG GRRMHSARAC LAPALRRANV TLMTGVLVER IGFEGKRATS VEVVHKGRAQ
SLQAGREIIL AAGAVNSPRI LQLSGLGPAE LLREHGIAPL MDAPHVGGNL QDHLGINYYF
RATEPTLNNV LRPLHGKIRA ALQYALTRRG PLALSVNQCG GFFRSDAGQR AADQQLYFNP
VTYTTTPDGK RTVVQPDPFA GFILGFQPTR PISRGRIDIS AADALAPPRI RPDSLAAQED
QAQVIAGGLL CQKIAKTEAL SRLIAAPMGE DLREMTPEQI LADFRERCGT VFHPVGTCRM
GADSTKSVVC PRLKVHGVAG LRVVDASVFP NITSGNTNAP TMMLATRAAG LILEDA
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