| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0719 |
|---|
| Symbol | |
|---|
| ID | 4076996 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 776435 |
|---|
| End bp | 777598 |
|---|
| Gene Length | 1164 bp |
|---|
| Protein Length | 387 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006016 |
|---|
| Product | peptidase M20D, amidohydrolase |
|---|
| Protein accession | YP_612714 |
|---|
| Protein GI | 99080560 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1473] Metal-dependent amidase/aminoacylase/carboxypeptidase |
|---|
| TIGRFAM ID | [TIGR01891] amidohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.093275 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGTCA AGAACCGCTT TGCTGAGTTG CTGCCCGAAA TTACTGCGTG GCGACGTGAC
CTGCACGAAA ACCCCGAAAT CCTGTTCGAA ACCCATCGCA CCAGCGCGCT GGTGGAGGAG
AAACTCAAGG CGTTCGGCTG CGACGAAGTG GTCACGGGCA TTGGCCGCAC CGGCGTTGTG
GGCGTCATCA AGGGTAAATC CTCCGCATCA GGCAAGGTCA TCGGTCTGCG GGCCGATATG
GACGCGCTGC CGATCCATGA AGAAACCGGG CTGGAGTATG CCTCCAAGAC CGCAAACGCC
ATGCACGCCT GTGGTCATGA CGGTCATACC GCCATGCTTT TGGGCGCGGC GAAATATCTC
TCCGAGACGC GGAACTTCGA CGGCACCGTT GTGGTGATCT TTCAGCCTGC CGAAGAAGGC
GGCGGCGGCG GCAAGGAAAT GTGCGATGAT GGCATGATGG AGCGCTGGGG CATCCAGGAA
GTCTATGGCA TGCACAATTG GCCGGGTCGC CCGGTTGGAA GCTTTGCAAT CCGTTCGGGT
GCCTTCTTTG CGGCGACCGA TCAGTTCGAC ATCACCTTTA CCGGCAAAGG CGGCCATGCC
GCTAAGCCGC AGGAAACCAT CGATTCGACC GTGATGGCAT CGCAGGCGGT GCTTGCCCTG
CAAACCATCG CTGCCCGCAA CGCCGATCCC GTGCATCAGA TCGTGGTCTC TGTGACCTCT
TTTGAGACCT CCTCCAAGGC GTTCAACGTG ATTCCTGAGC GCGTTCAGAT CAAAGGCACC
GTGCGCACCA TGGCGCCCGA GATGCGGGAT CTTGCTGAAA AACGTATCAA GGAAATCTGC
GCGGGCATCG CAGCGACCTT TGGCGGTGAA GCCGATGTGA CTTACCACCG TGGCTATCCG
GTGATGGTGA ACCATGACGA GCAGACCGAG TTTGCCGCCA AAGTGGCGCG TGACATTTCC
GGGCAGTGCG ATGAGGCGCC GCTGGTGATG GGGGGCGAAG ACTTTGCCTT CATGCTCGAA
GAGCGTCCCG GTGCCTATAT TCTCGTCGGC AATGGGGACA CCGCCGCCGT GCATCACCCC
AAGTATAACT TCACCGATGA TGCGATTCCC GCAGGCTGCA GCTGGTGGGC GGAGATCGTC
GAGCAGCGCA TGCCCGCAGC CTGA
|
|---|
| Protein sequence | MPVKNRFAEL LPEITAWRRD LHENPEILFE THRTSALVEE KLKAFGCDEV VTGIGRTGVV
GVIKGKSSAS GKVIGLRADM DALPIHEETG LEYASKTANA MHACGHDGHT AMLLGAAKYL
SETRNFDGTV VVIFQPAEEG GGGGKEMCDD GMMERWGIQE VYGMHNWPGR PVGSFAIRSG
AFFAATDQFD ITFTGKGGHA AKPQETIDST VMASQAVLAL QTIAARNADP VHQIVVSVTS
FETSSKAFNV IPERVQIKGT VRTMAPEMRD LAEKRIKEIC AGIAATFGGE ADVTYHRGYP
VMVNHDEQTE FAAKVARDIS GQCDEAPLVM GGEDFAFMLE ERPGAYILVG NGDTAAVHHP
KYNFTDDAIP AGCSWWAEIV EQRMPAA
|
|---|
| |