| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0362 |
|---|
| Symbol | |
|---|
| ID | 4077692 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 371829 |
|---|
| End bp | 372626 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 638005657 |
|---|
| Product | IclR family transcriptional regulator |
|---|
| Protein accession | YP_612357 |
|---|
| Protein GI | 99080203 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCGTG ATCTTGAGCA GGATCGCCGA TACGCCAACA CTCTGGCGCG TGGGCTGAAG
ATATTGCGCG CGTTTCGTCC GTCCGACAAC GGCTTGGGCA ATCTCGAAAT CTCTGAGCGC
ACCGGTATTC CGCGCTCCAC CGTCTCCCGG TTGACGTTCA CGCTCTGTGC CTTGGGCTAT
CTCACGCATG GGCGTCACTT TGACAAATAC CGGCTTGGGC CTGCGGCGCT CGCGCTTGGC
AATATCGCGT CTGCAGCGTT TGGGTTTGTG ACGGTGGCCG CACCGATCAT GCAGGAGCTT
GCCAACAAGG TGAATGCCCT CGTCGGAGTT GCGATTCAGG ACGATGGCAC CATGCTGATC
GTAAAAACCT GGCGGCCCGA GGGGTCGGGA GCGATCTGGC TCGATGTGGG CTATCGCATG
CCGGTTCTGA CCTCTTCATC GGGTGTGGCC TACCTTGGGG CGTTGACGCA GGAGGAGCGT
GAAAAGCTCG AGGCGCTTTT GCCCGAGGAG GGGGCCGAGA TCTGCGAAGA GGTCTGGCAG
CACCAGAGCG CGCAGCTGCG GCGTGTGGGC TATGCCTGTG TGGCAGAGGA TATGCGCTAT
TCTCGCGCGA TCCATGCGGT CGCAACCCCG TTTCGCCCCT CCGAAATCGG CGAACCGGTG
TCGATCTTCT GCGGGGCCAA TGTGGATGAT CTGAGCACCG AACAGATGCA TGTCGAGGTC
GGCCCCGAGC TTGTGAAGGC GGTCAACAGG CTGAAGCTGC TCACGGGGCA CGCGGTTTCG
GCCGTAGCGT CGGCCTGA
|
|---|
| Protein sequence | MMRDLEQDRR YANTLARGLK ILRAFRPSDN GLGNLEISER TGIPRSTVSR LTFTLCALGY
LTHGRHFDKY RLGPAALALG NIASAAFGFV TVAAPIMQEL ANKVNALVGV AIQDDGTMLI
VKTWRPEGSG AIWLDVGYRM PVLTSSSGVA YLGALTQEER EKLEALLPEE GAEICEEVWQ
HQSAQLRRVG YACVAEDMRY SRAIHAVATP FRPSEIGEPV SIFCGANVDD LSTEQMHVEV
GPELVKAVNR LKLLTGHAVS AVASA
|
|---|
| |