| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0307 |
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| Symbol | |
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| ID | 4077130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 312099 |
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| End bp | 313925 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638005601 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_612302 |
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| Protein GI | 99080148 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.339153 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGATC AGAACAAGAA TCTACTGCTC GCAACCGCTC TGAGTTTCCT GGTGATCCTC
GGCTGGTATT TCTTCTTCCC CCCGCCGGAA GAGGCGCCTC AGCCTGCGAC TGAAGTCACT
GAAACCGCGC CCCAAGGCGA TACGACCGCA CCTGCGGCCG CGCCCAGTGC CGGTGCGGCA
ACCGCCGAGG TCGACGCGGC CGCCGCCGAA ACCGAAATCA CCGAAGACGT CCCGCGCCTC
ACGATCGACA CCCCGCGTGT CGAGGGCTCC ATCTCTCTCA AAGGGGGCCG GATCGACGAT
CTGCGGCTCA AGGACTACCG CGAGACGCTG GATGACGATT CGCCAATCGT GACGCTCTTG
TCGCCTGCCG GTCAGCCCCA TGCCTACTAC GCGCTTTACG GCTGGGCGCC GGGGGCCGGT
CTTGGCATCG AAGATGTGCC CACCGCCAAT ACGCTCTGGC AGGCCGAAGC GGGCGCGACC
CTGACCCCAG ACACCCCGGT GACGCTCACT TGGGACAACG GCAAGGGCCT GACCTTCTCG
CGCGAAGTTT CCATCGATGA GGACTATATG TTCTCGATCA CCCAGTCGGT GACCAATAGC
TCCGGCGCGT CCGTCGCGCT GGCGCCCTAC GGCACCCTCG CCCGGCATGG CGAACCCGCC
AACCTCGAGA ACTTCTTTGT TCTGCACGAG GGCGTTGTGG GCATGGCCGA TGGCGAGCTG
TCGGAAATCG ACTATGACGA CATGACCGAT TTCGACCCCG ATCCCCGCGA CGGGTCGCGC
GCGCAGGTCA ACACCGTGAC CGAGAACGGC TGGATTGGCT TTACCGGCCA CTACTGGATG
TCGACGCTGA TCCCCGCCCC CGGTGAGGCC TTCCGCGCCA TCGCAAAATA CGACGAACGC
CGCGACATCT ACCAGACGGA TGTGGTTCTG CCGACCGTGA CCCTCGCCGC CGGCGAGAGC
ACCAGCGCGA ACACCCAGCT GTTTGCGGGC GCGAAGGAAT GGGCCACCAT CCGCGAGTAT
GAGCGTGCAG GCATCGAAGG CTTCCTCGAC TCGATCGACT GGGGTTGGTT CTTCTTCTTC
ACCAAGCCGA TCTTTGCCGT GCTGCACTGG CTCAATGCCG CGATCGGCAA CATGGGTGTT
GCAATCATCG CGCTGACGTT CCTGTTGAAA ATCCTCGTCT TCCCGCTGGC CTATAAATCC
TACGCCTCGA TGGCGCGGAT GAAGGAACTG CAGCCCGAGA TGGAAAAGCT GCGCGAACGC
GCGGGCGATG ACCGTCAGAA GATGCAAAAG GAGATGATGG AGCTCTACAA GCGCGAGAAA
GTCAATCCGG CCGCAGGCTG TCTGCCGATC CTGATCCAGA TCCCGATCTT CTTCTCGCTC
TACAAGGTGA TCTTCGTGAC ACTCGAGCTG CGCCATGCAG CCTTCTTTGG TCCCTTCCAG
GATCTCTCGG TGCCCGATCC CACCTCGCTC TTCAACCTCT TTGGCCTGCT GCCCTGGGCG
GCACCGGCCC CCGACAGCCT GCTGTCGCTG GTCTTCATCG GCATCCTGCC GATCCTCCTC
GGGGTCTCCA TGTGGGTACA GCAGAAACTG AACCCTGCCC CGACGGATGA AACCCAGCGC
ATGATCTTTG CGTGGATGCC TTGGGTCTTC ATGTTCATGC TGGGCGGCTT TGCCTCGGGC
CTCGTGGTCT ACTGGATCAC CAACAACGTG ATCACCTTCA CCCAGCAGTA TCTGATCATG
CGCTCGCACG GCTATACCCC TGATGTCTTT GGCAATATCA AGTCAGGCTT CAAGAAGGAC
AAAGCCGAGA AAGCCGAGAA GAAATGA
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| Protein sequence | MDDQNKNLLL ATALSFLVIL GWYFFFPPPE EAPQPATEVT ETAPQGDTTA PAAAPSAGAA
TAEVDAAAAE TEITEDVPRL TIDTPRVEGS ISLKGGRIDD LRLKDYRETL DDDSPIVTLL
SPAGQPHAYY ALYGWAPGAG LGIEDVPTAN TLWQAEAGAT LTPDTPVTLT WDNGKGLTFS
REVSIDEDYM FSITQSVTNS SGASVALAPY GTLARHGEPA NLENFFVLHE GVVGMADGEL
SEIDYDDMTD FDPDPRDGSR AQVNTVTENG WIGFTGHYWM STLIPAPGEA FRAIAKYDER
RDIYQTDVVL PTVTLAAGES TSANTQLFAG AKEWATIREY ERAGIEGFLD SIDWGWFFFF
TKPIFAVLHW LNAAIGNMGV AIIALTFLLK ILVFPLAYKS YASMARMKEL QPEMEKLRER
AGDDRQKMQK EMMELYKREK VNPAAGCLPI LIQIPIFFSL YKVIFVTLEL RHAAFFGPFQ
DLSVPDPTSL FNLFGLLPWA APAPDSLLSL VFIGILPILL GVSMWVQQKL NPAPTDETQR
MIFAWMPWVF MFMLGGFASG LVVYWITNNV ITFTQQYLIM RSHGYTPDVF GNIKSGFKKD
KAEKAEKK
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