Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0255 |
Symbol | rpsC |
ID | 4076015 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 270443 |
End bp | 271162 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638005549 |
Product | 30S ribosomal protein S3 |
Protein accession | YP_612250 |
Protein GI | 99080096 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0092] Ribosomal protein S3 |
TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACATA AAGTCAATCC GGTTGGCATG CGCCTGCAGA TCAACCGCAC CTGGGACAGC CGCTGGTACG CTGACACCAA GGACTACGGT GATCTCCTCC TCGAGGACAT CAAGATCCGT GAGTTCATCA AAGAAGAGTG CAAGCAGGCC GGTGTTGCCC GCGTGATCAT CGAACGCCCC CACAAGAAGT GCCGTGTGAC CATTCACACC GCGCGTCCGG GCGTGATCAT CGGCAAAAAA GGCGCGGACA TCGAAGTTCT TCGCAAGAAG ATCGCTTCCA TGACCGACTC CGAGCTGCAC CTCAACATCG TTGAGGTTCG CAAGCCGGAA CTCGACGCAC AGCTCGTTGG CGAGTCCATC GCTCAGCAGC TGGAGCGCCG TGTGTCCTTC CGCCGCGCGA TGAAGCGGGC CGTGCAGAAC GCCATGCGCA TGGGCGCCCT GGGTATCCGG GTGAACGTCG CTGGTCGTCT GGGCGGTGCA GAAATCGCAC GTACCGAATG GTACCGTGAA GGTCGTGTGC CGTTGCACAC CCTGCGCGCA GACATCGATT ACGCACACTC TGAAGCATCC ACCCCCTATG GTATCATCGG TATCAAGGTC TGGATCTTCA AAGGTGAGAT CATGGAGCAT GATCCTCAGG CGCGTGATCG CAAGGCTCAG GAACTCCAGG ACGGTCCGGC ACCTCGCGGT GCAGGCGGTA ACCGTCGTGG CGATCGCTAA
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Protein sequence | MGHKVNPVGM RLQINRTWDS RWYADTKDYG DLLLEDIKIR EFIKEECKQA GVARVIIERP HKKCRVTIHT ARPGVIIGKK GADIEVLRKK IASMTDSELH LNIVEVRKPE LDAQLVGESI AQQLERRVSF RRAMKRAVQN AMRMGALGIR VNVAGRLGGA EIARTEWYRE GRVPLHTLRA DIDYAHSEAS TPYGIIGIKV WIFKGEIMEH DPQARDRKAQ ELQDGPAPRG AGGNRRGDR
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