Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0178 |
Symbol | |
ID | 4078786 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 198056 |
End bp | 198667 |
Gene Length | 612 bp |
Protein Length | 203 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638005472 |
Product | TetR family transcriptional regulator |
Protein accession | YP_612173 |
Protein GI | 99080019 |
COG category | [K] Transcription |
COG ID | [COG1309] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.481499 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCAAGG CGGGGCAGGT ACGGGGTCGG GGGCGTCCGC GCAAGTTCGA CGAACAGGTG GTGCGCCAGA CCATCCTGAG CGTGTTCTGG GAGAAGGGCT ATGCCGCTAC ATCGCTGGAT GACCTCTCCA AGGCCACCGG CCTCGTCCGC CCCAGCCTCT ATGCGGCCTT TGGTAACAAG GAAGAGATGT TCCTGCGCGC GATGGATGAT TTTGTCATCC GCGTGCAGAG TGATCTGAAC CGACAAGTGC CCCGCGACGC GACGCCCGAG GACGCGTTGC GGATCATCTA CACCGCCATG CTGGAGATCT ATAGCGGGGC GCATGCGAAG GGCTGCCTGG TTTTCTCGAC CGCTGTCGCA GAGGCCCCCG CGCACCCGGA GATTCGCGCC CGGCTGGCCC AGCGCCTGGT GCAGACCGAC GCGCAGTTTC GCCGCCTTTT TGACCACACC GCCCCGGGTG CATCAGAGAC CGCAAGACAG GCCGCCGCAG AGATGGCAGC GGCGGTTCTG CATTCGCTGG GCCTGCGGGT ACGGGCAGGC GCCGAGCCGG ATGAGGTGCG GCGCTTTATT GAAACCGCGG CCCGTTCCAT TGCCGCCGGG CTGGCCCCCT AA
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Protein sequence | MSKAGQVRGR GRPRKFDEQV VRQTILSVFW EKGYAATSLD DLSKATGLVR PSLYAAFGNK EEMFLRAMDD FVIRVQSDLN RQVPRDATPE DALRIIYTAM LEIYSGAHAK GCLVFSTAVA EAPAHPEIRA RLAQRLVQTD AQFRRLFDHT APGASETARQ AAAEMAAAVL HSLGLRVRAG AEPDEVRRFI ETAARSIAAG LAP
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