| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2609 |
|---|
| Symbol | |
|---|
| ID | 2740783 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | + |
|---|
| Start bp | 2650561 |
|---|
| End bp | 2651964 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637161505 |
|---|
| Product | putative tRNA modifying protein |
|---|
| Protein accession | NP_973207 |
|---|
| Protein GI | 42528109 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0621] 2-methylthioadenine synthetase |
|---|
| TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family
[TIGR01125] MiaB-like tRNA modifying enzyme YliG, TIGR01125 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATTTGC ACGGTTGTGC AAAAAATCAG GTTGATGCCG AACTTATAAT CGGGATAATG
GAAAATTTAT CATGGAAAAA CACCTCCGAT CCCGATGAGG CGGATCTTAT TATAGTCAAT
TCATGCGGCT TTATTAATTC TGCAAAAGAA GAATCGATAA ATGCCGTTTT ACAGGCTAAA
GCGGCCCACC CTAAGGCTAA GGTTCTATTA GCCGGATGTT TGGCCGAACG TTATGCCGAT
ATCCTCAAAA ACGATTTACC TGAAGCAGAC GGTATTTTTG GAAACGGAAA CCTTTCCCTA
CTGCCTCAAT TAATAGACTC CATGTTTCCT AAGAAAACTT CGGATGAAAA ATTCATTGAG
AAGACCCTTG TTCCTCCGCA AATAGGCATC TGCGGAGGAG AAAGGCCTAA AATACTTAAC
TTTCCGCGGT CTACCTATAT CAAAATAACC GAAGGCTGTG ATAACTTTTG CAGTTTTTGT
GCCATACCCA TTATCAGGGG GCGCTTAAGA AGCCGCCCTA TTAAAGACAT CTGCGATGAG
ATAAAAACCT TTTTAAAAAA AAGCTTTTAT GAGTTCAACC TGATAGGTCA AGACTTAGCT
GCCTATCAAA CAGGAAAAGA TGATTTAAGT GAAGATGAAC TGCATAGAGA AAACTGCTCG
GGTTTAGCCC TTCTTTTAAA GAGCATTTCG AAAATAAAGG GTAATTTTAA AATCAGATTA
CTTTACATTC ATCCCGATCA CTTTCCCCTT GATATTCTTC CTATAATGAC GGCAGATAAA
AGATTCCTGC CCTATTTCGA TATTCCATTT CAATCGGGTG CACAAAAAAT AATAAGGGCT
ATGAACCGAA ATGGAGCTGC CGAGGTTTAC CTAGATATCA TAAAGAATAT ACGGGAGGCT
TTTGAAAAAA CAAACAGTCC TTACGGAGAG CCGCAAATAC GGACAACCTT TTTGGTAGGC
TTTCCGGGCG AAACTGACGA AGATTTCAAT GAGACCATCA AGTTTTTAAA GGAATTAAGG
CCTCTTTGGT CGGGCGGCTT TACATATTCA AGAGAGGAGG ATACTCCTTC ATATTCCTTT
AAGGGAAAAG TTCCCAAAAA AACGGCGGAA GCCCGTCTTG CCGAAATACA AAATGCTCAA
ACCTCCATAA CGGAAAAAAA ACTGGATTCC TTTATAGGAA AAGAAATAGA GGTCTTAGTA
GAAGAACTTA TACAGGCAGA AGATAAAACA TTTTTAGCTC TCGGACGGGC TTGGTTTCAA
GCTCCGGAAG TTGACGGAGC TGTTGTTTTA AACTTTAATT TAAACAAAAA AGACATTGAT
GGAAACCCGA TAGCTCCCGG TTCCATTGTA AAAGCAAGGA TTGCAGCCCG AAACGGTTTT
GATTTAGAAG CCGTAGCCGT TTAA
|
|---|
| Protein sequence | MDLHGCAKNQ VDAELIIGIM ENLSWKNTSD PDEADLIIVN SCGFINSAKE ESINAVLQAK
AAHPKAKVLL AGCLAERYAD ILKNDLPEAD GIFGNGNLSL LPQLIDSMFP KKTSDEKFIE
KTLVPPQIGI CGGERPKILN FPRSTYIKIT EGCDNFCSFC AIPIIRGRLR SRPIKDICDE
IKTFLKKSFY EFNLIGQDLA AYQTGKDDLS EDELHRENCS GLALLLKSIS KIKGNFKIRL
LYIHPDHFPL DILPIMTADK RFLPYFDIPF QSGAQKIIRA MNRNGAAEVY LDIIKNIREA
FEKTNSPYGE PQIRTTFLVG FPGETDEDFN ETIKFLKELR PLWSGGFTYS REEDTPSYSF
KGKVPKKTAE ARLAEIQNAQ TSITEKKLDS FIGKEIEVLV EELIQAEDKT FLALGRAWFQ
APEVDGAVVL NFNLNKKDID GNPIAPGSIV KARIAARNGF DLEAVAV
|
|---|
| |