Gene TDE2478 details

Gene Information

• Locus tag: TDE2478
• Symbol: uvrC
• ID: 2741451
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: +
• Start bp: 2501013
• End bp: 2502971
• Gene Length: 1959 bp
• Protein Length: 652 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637161370
• Product: excinuclease ABC, C subunit
• Protein accession: NP_973076
• Protein GI: 42527978
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0322] Nuclease subunit of the excinuclease complex
• TIGRFAM ID: [TIGR00194] excinuclease ABC, C subunit

Plasmid Coverage information

• Num covering plasmid clones: 9
• Plasmid unclonability p-value: 0.446818
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGAAA TTACTACGCG TGAAAAACTG CATGAGGTTG CTCTCTCGGC TCCGAAAACG 
AGCGGGGTTT ATCTTTGGAA GGATAAGGCC GGAACGGTTA TCTATGTCGG GAAGGCTAAA 
TCTTTAAAGA ACCGGCTCAG CTCTTATTTT ACATCGAACA GGGATATTAA AACCCGAATC 
CTGGTTTCCC GTGCCGAGTC AATCGAGTAC ATTCAAACCG AAAACGAGTA TGAAGCCCTC 
CTCTTGGAAA ATACTCTAAT CAAAAAACAT AAGCCGAGAT ACAATATAAA TCTAAAAGAC 
GGGAAAACCT ATCCCGTCTT AAAATTAACC AATGAAGAAT TTCCGAAAGT TTACCGCACT 
CGGAATATTA AAAATGACGG CTCAAAATAT TTCGGGCCGT TTCCCAATGT TTCGGCCGTC 
GATATGTTTT TAACTCTTAT AAAACATAAT TATACCCTGC GTCAATGTAA GCAATTAAAA 
AAGCGGGAGA CTCCCTGCCT TTATTTCCAC ATCGGAAGAT GTAAGGCTCC ATGCTGCGGC 
AAGATAAGTG CAGAAGAATA CGGTAAGGAT ATAGAAGAAA TTACCCTACT TTTAGAAGGC 
GAAATGGAAG ATGTTTCCGG CACCTTAAAA GAAAAGATGA AAGAGGCGGC AGAAAAAAAA 
GAGTTTGAAA AGGCTGCCCG TCTCCGCGAC GGAATACAGG CAGTCTATGC TCTTCGCGGA 
CAAAACATAG TTCAAGACAT GGACCCCGAA AGCCGCGATT ATATTGCATG GGCATTTGAA 
GGAGCCATGG TCAGCATAGC CGTTTTAAAG ATGAGAAACG GACGGCTTGT CGGCCGCGAC 
CTTTACCGTT CGCACAGCTT AAAAGAAGAA GGAGAAATTC TATCCGAATT TATATCGGCT 
TATTACACTT CGGCAAACGA AGTTCCGCCT AAAATATTTA TTCCGCAAGC TGCCGAAGGA 
AACGCCCTCA TCGAAAAATG GCTTAACGAG GAGCTTCACG CAAAGACAAG AATAAGCATT 
ATTCCATTAG AAAAAGAAAG TCTTGCAGCA GAAGAAAGAT CAGCAGCAGA CAGTCTTACA 
GAAATCGAAG AAGCGGCTTC CAAAACAATC GGCTACGCCG TTAAAGAGCC GGCACCTTTG 
AGTGCCCAAG AAGAAAAGCT GAATCTTTCT CCGGCTGAAA TTAAACACCA CAAGGCGGCA 
TTGAAGATGG CTCGTTTTAA TGCAAAAGAA GATGCTATGC GCCGCCTAAG AGAACAGGGA 
GATTTCGCCG CTGTTGAAGA CTTGCAAAAA AGGCTTAACC TGCCCTGCCT TCCGCAGCGT 
ATCGAAGGCT TCGACATTGC TCACCTCGGC GGCACATTTA CGGTCGCTGC CCTGATTTCT 
TTTAAAGAAG GAAATCCGGA CAAAAAGAAT TACAGAATAT TCAGGTTAAA AAATACTGAC 
GGCGTAATCG ATGACTATGC TTCGATGAGA GAAGTAATAG CCCGCCGCTA TACCCGCCTT 
CTCAACGAGG GTGCAGACCT CCCCGATCTA ATTCTTATAG ACGGAGGCAT TGGGCAGGTA 
AATGCTGCAA GCAAAATCGT AGACGCCCTC GATCTCGGCA TTCCGGTTAT CGGCCTTGCC 
GAAAAAAATG AAGAGGTTTA TTTTCCGCAC AATTCGAAAC CTGTCATCTT GCCGCGAAGA 
AGCGATGCCC TCCGCCTTCT TCAAAGAATC CGAGATGAGG CACACCGCTT TTCAAACACA 
AGGAACAATA AACTCCGCAG GGCAAACAAA CTTAAAACCG AATTTGAAAA CCTTCCCCAC 
ATCGGAAAAA AGAGAGCCCA TGTTTTGTTA AAAGCCTTCG GCAGCACGGA AAACCTAAAA 
ACGCTAACAG CCCAAGCTCT TTCCGAAACC GCAAAGATTT CTTTAAAACA AGCAGAAGAA 
GTTTTGGATG CGGTGAAGAC GACCAATAAT AATAATTGA 

 

Protein sequence

MAEITTREKL HEVALSAPKT SGVYLWKDKA GTVIYVGKAK SLKNRLSSYF TSNRDIKTRI 
LVSRAESIEY IQTENEYEAL LLENTLIKKH KPRYNINLKD GKTYPVLKLT NEEFPKVYRT 
RNIKNDGSKY FGPFPNVSAV DMFLTLIKHN YTLRQCKQLK KRETPCLYFH IGRCKAPCCG 
KISAEEYGKD IEEITLLLEG EMEDVSGTLK EKMKEAAEKK EFEKAARLRD GIQAVYALRG 
QNIVQDMDPE SRDYIAWAFE GAMVSIAVLK MRNGRLVGRD LYRSHSLKEE GEILSEFISA 
YYTSANEVPP KIFIPQAAEG NALIEKWLNE ELHAKTRISI IPLEKESLAA EERSAADSLT 
EIEEAASKTI GYAVKEPAPL SAQEEKLNLS PAEIKHHKAA LKMARFNAKE DAMRRLREQG 
DFAAVEDLQK RLNLPCLPQR IEGFDIAHLG GTFTVAALIS FKEGNPDKKN YRIFRLKNTD 
GVIDDYASMR EVIARRYTRL LNEGADLPDL ILIDGGIGQV NAASKIVDAL DLGIPVIGLA 
EKNEEVYFPH NSKPVILPRR SDALRLLQRI RDEAHRFSNT RNNKLRRANK LKTEFENLPH 
IGKKRAHVLL KAFGSTENLK TLTAQALSET AKISLKQAEE VLDAVKTTNN NN