| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TDE2407 |
|---|
| Symbol | purF |
|---|
| ID | 2740709 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Treponema denticola ATCC 35405 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_002967 |
|---|
| Strand | - |
|---|
| Start bp | 2433734 |
|---|
| End bp | 2435197 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637161298 |
|---|
| Product | amidophosphoribosyltransferase |
|---|
| Protein accession | NP_973006 |
|---|
| Protein GI | 42527908 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0034] Glutamine phosphoribosylpyrophosphate amidotransferase |
|---|
| TIGRFAM ID | [TIGR01134] amidophosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.848054 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAGG ATGATATTTT TAAATCGAGT TTAGGGGAAG AATGCGGGAT CGCAGCTGTC
TGGGATTCAA ACTCCTATAA GACGGAAAAT CCCGAAAGGC TGCCTTTCAG GCCGGATGAC
GCTGCCCGCT CGGTTTTTTA TGCTCTTTTT TCTCTTCAAC ACAGGGGACA AGAAGCGGCC
GGAATGGCTG TTTCAAACGG AAAACATATC CGAGTCTTCA AAAAACCGGG CCTTGTTTCC
AACATTTTTA CCGAACACGA TATATCGAAT CTCCAAGGTT ATGCTGCCAT CGGCCACACC
CGCTACTCGA CTACCGGTTC TTCTTCTTTT GGAAATATCC AGCCCTTTTA TATAGAAACA
ATGTACGGGC CTATAGCCCT TGCTCATAAC GGAAACCTTG TAAACGCCCC GCATTTAAGG
CAAAAACTTT TGGAAAGAGG GGTGGGGCTT TCTTCTACCT CCGATACCGA AGTTATGATT
ATGATGCTTG CCGCTGCCAA AGGCGATTCT TGGGCGGAGC GTATAGCTTC ATGTATGAGA
GAATGGGAAG GAGCTTTTTC GATTGCCGTT TTAACGGTTG AAGGAATTTA CATAGCCAGA
GACCCTTGGG GCTTCAGACC TCTTTGTGTC GGAAGTTTTC AGGAAGGGGT ATCGGTTGCG
GCAAGCGAAT CTTGTGCTCT TTTAACATTG GGCTGTAGGG ATGTTACTGA GGTAAAAGCC
GGTGAGATTC TAAAGCTTGT CGATAACGGA GCCGAGCTTT GTATGCGCAT TCCGCCTAAG
GAGCCTCTTT CTCCATGTAT TTTTGAGTAT GTCTATTTTG CCCGCCCCGA CTCGGTTTGG
AACAATGCTT CGGTTCACGT ATCCCGTGTA AATTTCGGCA AGGAGCTTGC AAAAAGCTCC
CCAGTTGAGG CCGACATAGT TATAGCTATT CCCGATTCGT CCCGTTCGGC AGCCATAGGC
TACTCTCAAG AATCGGGCAT TCCCTATGAT GAGGGTTTTT CAAAAAACCG CTACATAGGA
CGCACCTTTA TTCAGCCTAC CCAAAAATTG CGTGACCAAG GCGTTGCGAT GAAATTCAAT
GTTCTCTCTG AAGCTGTCGA AGGAAAACGC ATCGTAGTGG TCGATGACAG TATTGTCCGC
GGAAGCACCA TGGGACCCTT AATCAAAATG CTTAGGGGAG CAGGTGCAAA AGAAGTTCAT
ATCAGAATAT CTTCTCCTCC GGTACGATAC TCCTGTTTTA TGGGTGTAGA TATGGGAGAC
CCTGAAAACC TCATCGCCCA CAAAAAATCG GTTGAAGAAA TCAGGGAACA CATCGGTGCA
GACTCCTTAG TCTATCTATC CCAAGAAAGT ATGCTCAAGG CGATGAAGGA TGCCGGAGCA
AACACCCACT TTTGCTGTGC CTGCTTTGAC GGAAAGTACC CCGTCGATGT CAGCGGCGCC
GCCGATAAAA ACAGCTTTGA GTAA
|
|---|
| Protein sequence | MSKDDIFKSS LGEECGIAAV WDSNSYKTEN PERLPFRPDD AARSVFYALF SLQHRGQEAA
GMAVSNGKHI RVFKKPGLVS NIFTEHDISN LQGYAAIGHT RYSTTGSSSF GNIQPFYIET
MYGPIALAHN GNLVNAPHLR QKLLERGVGL SSTSDTEVMI MMLAAAKGDS WAERIASCMR
EWEGAFSIAV LTVEGIYIAR DPWGFRPLCV GSFQEGVSVA ASESCALLTL GCRDVTEVKA
GEILKLVDNG AELCMRIPPK EPLSPCIFEY VYFARPDSVW NNASVHVSRV NFGKELAKSS
PVEADIVIAI PDSSRSAAIG YSQESGIPYD EGFSKNRYIG RTFIQPTQKL RDQGVAMKFN
VLSEAVEGKR IVVVDDSIVR GSTMGPLIKM LRGAGAKEVH IRISSPPVRY SCFMGVDMGD
PENLIAHKKS VEEIREHIGA DSLVYLSQES MLKAMKDAGA NTHFCCACFD GKYPVDVSGA
ADKNSFE
|
|---|
| |