Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TDE1082 |
Symbol | |
ID | 2739094 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Treponema denticola ATCC 35405 |
Kingdom | Bacteria |
Replicon accession | NC_002967 |
Strand | + |
Start bp | 1113275 |
End bp | 1114312 |
Gene Length | 1038 bp |
Protein Length | 345 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 637159956 |
Product | ribosomal large subunit pseudouridine synthase D |
Protein accession | NP_971690 |
Protein GI | 42526592 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 50 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACGCTCA ATAAGAGTGT TCCTTGCAGA TCCATATCCG AAAAATTTAA GGTTGACGGT CTTGTATCTC CTTGCAGGAT TGATGTTTAT TGTACCGAAA CCTTGAAACA CTTAAGCCGC TCTCAATTAA AGACGGGCTT AAAGTCCCTT TATGTAAATT CGCAAAAAGC CAAGCTTTCC CGCAATGTTC AAAACGGAGA CCTTATTGAG CTTGTTTGGG ATAATCCGAT CCCCGAATAT GCTCATCCTC AAAAACTTCC GCTTAATATA ATTTATGAAG ACGAGAATAT AATTGTTGTA AACAAGGAAA GGGGCATGGT AACGCATCCG GCAGGCGGAA ATTGGGACGG CACCCTTGTA AATGCTTTAA ATTATTACAG ACTTTATGAT TCTAGGATTA AGGATGAGTT TGCCGTAGAA CTTAATAAGC TTTTAAGTGG CGAAGTAAAG AATATTGAAA AACTTTCTTT GGAGCCCTAC CGCATGGGTA TTGTTCACCG TCTGGATAAG GAAACTTCGG GGCTTATTAT TACGGCAAGG AATTTAAAAA CCGAAAAGCT TTTAAAATCT TTTTTTAAAA AAAGGGCGGT AAAAAAATAT TATCTTGCAG TCCTTGACGG CGTTCCGCCT AAAAATAAGG GCAGGATAAA GACTTCTGTT TTTCGATCAA GTTCCGACAG AAAAAAATTT AGCGTCTCTG CCGATTTGTC AAAAGGGAAA AAAGCTCTTT CAGCCTATAA GGTTTTGAAA TCCGACGGAA AAATGTCCTT GGTTCTTTTT AGGATTTACA CAGGCCGGAC TCATCAAATC CGCTTACATG CCAAGTTTAT GGGATGTCCC GTTGCAGGAG ACAAAGTTTA CGGCAAAAAA AAGACAGGTC TTGAAAAGAA AACAGGTCTT GCCAAAAAGA CCGGTATGCC GCTTATGCTT CATGCTTATA AGCTGATAAT TCCTGATACC GTAAATTCAA AAAAAGAATT TAAGGCGCCT ATACCTAATG ATTTTAAACA AATACTGATA CGGGAGGCTC TATGTTAA
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Protein sequence | MTLNKSVPCR SISEKFKVDG LVSPCRIDVY CTETLKHLSR SQLKTGLKSL YVNSQKAKLS RNVQNGDLIE LVWDNPIPEY AHPQKLPLNI IYEDENIIVV NKERGMVTHP AGGNWDGTLV NALNYYRLYD SRIKDEFAVE LNKLLSGEVK NIEKLSLEPY RMGIVHRLDK ETSGLIITAR NLKTEKLLKS FFKKRAVKKY YLAVLDGVPP KNKGRIKTSV FRSSSDRKKF SVSADLSKGK KALSAYKVLK SDGKMSLVLF RIYTGRTHQI RLHAKFMGCP VAGDKVYGKK KTGLEKKTGL AKKTGMPLML HAYKLIIPDT VNSKKEFKAP IPNDFKQILI REALC
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