Gene TDE0593 details

Gene Information

• Locus tag: TDE0593
• ID: 2741556
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 632131
• End bp: 634026
• Gene Length: 1896 bp
• Protein Length: 631 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637159469
• Product: internalin-related protein
• Protein accession: NP_971207
• Protein GI: 42526109
• COG category: [S] Function unknown
• COG ID: [COG4886] Leucine-rich repeat (LRR) protein

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.138946
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAAAAT TTTTGACGGT ATTATTTTTA ACAGGATTGT TGACAACGCG TATCGCAGCA 
GCGGAAAATC CTGCAAAAAC CGCAGGCTCA GGAAGAGCAA TACTCGGTAT AAGCGACGAC 
CAAAAAGAGA TAGTCGTAAC AGCGGTAACG GCAGACGGTT CTGCAGTACA TGTTGAAGGT 
TGCACGGTTA CGGAATTACC GAGCGGAGAA GAAACGATCC TCACGGCAAC AGGAGCAAAG 
GTTATCCTTA AAGGCGCTAT TACCAAGCTG GACTGTGGAG GCAACCGGCT TACAGAGCTT 
AACGTACAGG GGTTAACAGC TTTACAAAAA TTATTCTGCG ATGACAATCT GCTTACTTCG 
CTTGATGTCA GCGGTGTAAC CGCTTTGCAA AGCTTGAGCT GCGGAGAGAA TCTACTGACC 
TCGCTCGACG TATCGGGTTT AACCGGTTTA CGGGAACTGT ACTGCAACCG CAATCATCTG 
TCTTCGCTTG ATGTACAGAG TTTAACCGCT TTGCAGGATT TGTTCTGCAA CGCCAATAAA 
CTTACTTCGC TTAACGTACA AGACCTAAAA GTGTTACAGA GACTGCACTG TAACAGCAAC 
CGGCTTACTT TACTCAATGT TCGGGATTTA AGTGCTTTAC AGGAACTGGA CTGCGTAGGT 
AATGAACTTA CCTCGCTTGA TGTACATGGC GTAACCGCCT TATGGGAACT GGAATGCAGC 
AAAAACATGC TTACTTTGCT CGATGTACAA AGTTTAACTT CCTTATCGAA GCTGGACTGT 
TCCGCAAATC AACTTACCTC ACTAGACGTA CGGAACTTAG CAGCTTTGGA GGAACTGGAT 
TGTAGTAACA ATAAACTTAC CGCACTTTAT GTGCAGGGAT TGAATGCGTT ACAGGAACTG 
AACTGTTCCG AAAATGAGCT CACCTCACTC GAAATACAGG GTTTGACTGC TTTGGAAGTA 
CTGGATTCCG GCCGCAATGA CCTTACCTCA CTCGATGTAC AAGGATTACC GGCTTTAAAG 
ATACTGAGCT GTACTGTCAA TGAGCTTACC TCACTCAAAG TACGGGACTT ACCGGCCTTG 
GAAAAACTGG ACTGTTCCGT AAATCAACTT ACCTCAATCG ATATACTAGA GTTAACCGCT 
TTAAAGGAAC TGAACTGTTC CTTAAATCAA TTTACCTCAA TCAATATACT GAAGTTAACC 
GCTTTAAAGG AACTGGACTG TTCCACAAAT CAACTTACCT CACTAGACGT ACGGAACTTA 
GCAGCTTTGG AGAAACTGGA TTGCAGGGAC AATAAACTTA CCTCGCTTAA TGTGCAAGGA 
TTGAATACAT TACAGAAATT GTACTGTTCC GAAAATGAGC TTACCTCACT CGAAATACAA 
GGCTTAAAGA CGTTGCAGAA ACTGAACTGT TACAAAAACA AGCTTACCTC ACTCAATGTA 
CAGGGGCTGA CCGCTTTACA GTGGCTGAAT TGCGGGTATA ATGAACTTAC AACACTTAAC 
CTAAAAGGCT TACACGCATT GCGTGACCTG GAGTGCTTTA ACAATAATCT TCCTGAACTC 
GACGTACAGG ACATAAACAC CTTACAAAGA CTGAACTGTT ATCATAATAA ACTTTCTACT 
CTTGAACTAT CAACATTACA CGGTTTACAG GAACTGTGCT GCTATGATAA CCTTTTTAAC 
GAAAAAACCC TTATCCGGAT ACTAACCGCC CTGCCCGATA GGAAGCAAAA AAAAGAAGGC 
AGAGCTTTGA TATATGGTAA AAAAAATGAT CTAAGGGAAG GAACTATAAC GGATTTTTCT 
TCTTCCGCCG AATTAAAAGC TGCTTTTGAA GCTGCAAAAG CAAAAAACTG GAGATTCTAT 
AAACGGGATA CAGTTGGAAA TGAGGAAGAG GTTTAA 

 

Protein sequence

MKKFLTVLFL TGLLTTRIAA AENPAKTAGS GRAILGISDD QKEIVVTAVT ADGSAVHVEG 
CTVTELPSGE ETILTATGAK VILKGAITKL DCGGNRLTEL NVQGLTALQK LFCDDNLLTS 
LDVSGVTALQ SLSCGENLLT SLDVSGLTGL RELYCNRNHL SSLDVQSLTA LQDLFCNANK 
LTSLNVQDLK VLQRLHCNSN RLTLLNVRDL SALQELDCVG NELTSLDVHG VTALWELECS 
KNMLTLLDVQ SLTSLSKLDC SANQLTSLDV RNLAALEELD CSNNKLTALY VQGLNALQEL 
NCSENELTSL EIQGLTALEV LDSGRNDLTS LDVQGLPALK ILSCTVNELT SLKVRDLPAL 
EKLDCSVNQL TSIDILELTA LKELNCSLNQ FTSINILKLT ALKELDCSTN QLTSLDVRNL 
AALEKLDCRD NKLTSLNVQG LNTLQKLYCS ENELTSLEIQ GLKTLQKLNC YKNKLTSLNV 
QGLTALQWLN CGYNELTTLN LKGLHALRDL ECFNNNLPEL DVQDINTLQR LNCYHNKLST 
LELSTLHGLQ ELCCYDNLFN EKTLIRILTA LPDRKQKKEG RALIYGKKND LREGTITDFS 
SSAELKAAFE AAKAKNWRFY KRDTVGNEEE V