Gene TDE0305 details

Gene Information

• Locus tag: TDE0305
• Symbol: ychF
• ID: 2741026
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Treponema denticola ATCC 35405
• Kingdom: Bacteria
• Replicon accession: NC_002967
• Strand: -
• Start bp: 335735
• End bp: 336841
• Gene Length: 1107 bp
• Protein Length: 368 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 637159177
• Product: GTP-dependent nucleic acid-binding protein EngD
• Protein accession: NP_970919
• Protein GI: 42525821
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0012] Predicted GTPase, probable translation factor
• TIGRFAM ID: [TIGR00092] GTP-binding protein YchF

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 0.0911742
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCTATAA ATTGCGGAAT TGTGGGTTTA CCCAATGTAG GAAAATCGAC TATATTTTCG 
GCTCTTACAA GTGCGCCGGC TGAGGCTGCT AATTATCCGT TTTGTACAAT AAACCCCAAT 
GTAGGAATTG TAAGTTTACC TGATGCCCGT TTAAAAAAAC TGGCTGAACA TTTTAATCCC 
AAAAAGGTAA TTCCTGCAAC CGTAGAATTT GTGGATATTG CAGGTCTTGT AAAAGGAGCT 
TCAAAGGGAG AGGGTTTAGG GAATCAGTTT TTGTCCCATA TCAGAGAAGT CGGCGTTATT 
GCCCACGTTG TGCGCTGTTT TGATAATGAT GATATTGTCC ATGTTTCAGG GAAAATAGAT 
CCGGCTTCCG ATATTGAAAC GATAAATATC GAGCTCGCTC TTGCCGATCT TGCAAGTTTG 
GATAAAAGAG CTGAGCGTGC CGAAAAGGCG AGCCGCATGG GTAAGGAAGC TCAAAAAGAA 
GCTGCTGTCG TAATGCGGGC TATCGAAAAA ATTCGTCCTC TTCTGCAGGA AGGAAAGGGC 
GCCCGCCTTG CCGACTTGAC CGATGACGAA AGAGCCGCAA TCTACGACAC CCATCTAATT 
ACAATGAAAC CTCAAATGTA TGTTTGCAAT GTAGATGAAA CAGGTGCCCA AGACAGCAAT 
CCCTATATAG CGGCGGTTAA AAAGATTGCA GAATCCGAGG GGGCAGATAC CGTTGTAATT 
TGCGGAAAGT TTGAAGCCGA ATTAGCCGAC CTTGAAAGTG AAGAAGAACG CCTAAGCTTT 
TTAGCTGAGG TTGGCTTGGA AGAATCGGGC CTTTCACAGC TTGCGAGGGC AGCCTATCAC 
TTAATCGGGC TTAGAACCTT CTTTACGGCC GGAGAAGATG AGTGCCGCGC ATGGACAATC 
CATGCCGGGG ATACGGCTCC AAAGGCTGCC GGAGTTATAC ATACCGACTT TGAAAAGGGT 
TTTATAAAGG CGGAAGTATA CAGCTTTGAT GACTTTGTAA AATACGGAAG TGAACAAAAG 
ATAAAGGAAG CAGGACGTTA CCGTCAAGAA GGGAAAGCCT ATGTAGTAAA TGACGGTGAT 
ATTATGTTCT TTAAATTTAA TGTTTAA 

 

Protein sequence

MAINCGIVGL PNVGKSTIFS ALTSAPAEAA NYPFCTINPN VGIVSLPDAR LKKLAEHFNP 
KKVIPATVEF VDIAGLVKGA SKGEGLGNQF LSHIREVGVI AHVVRCFDND DIVHVSGKID 
PASDIETINI ELALADLASL DKRAERAEKA SRMGKEAQKE AAVVMRAIEK IRPLLQEGKG 
ARLADLTDDE RAAIYDTHLI TMKPQMYVCN VDETGAQDSN PYIAAVKKIA ESEGADTVVI 
CGKFEAELAD LESEEERLSF LAEVGLEESG LSQLARAAYH LIGLRTFFTA GEDECRAWTI 
HAGDTAPKAA GVIHTDFEKG FIKAEVYSFD DFVKYGSEQK IKEAGRYRQE GKAYVVNDGD 
IMFFKFNV