Gene TDE0170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTDE0170 
Symbol 
ID2739522 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameTreponema denticola ATCC 35405 
KingdomBacteria 
Replicon accessionNC_002967 
Strand+ 
Start bp198929 
End bp200080 
Gene Length1152 bp 
Protein Length383 aa 
Translation table11 
GC content41% 
IMG OID637159039 
Productnuclease SbcCD, D subunit, putative 
Protein accessionNP_970786 
Protein GI42525688 
COG category[L] Replication, recombination and repair 
COG ID[COG0420] DNA repair exonuclease 
TIGRFAM ID[TIGR00619] exonuclease SbcD 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAATTT TGCATACAGC CGATCTGCAT TTGGGGAAAA GCCTATATGA ATCTCCCCAG 
ATAGAAAGAC AGAAAAAAAT GCTCGATGAT ATTCATAAAA TTCTTCTAAA AGACGATTAT 
GCAGCCCTTA TTATTGCAGG CGATATCTAC GACCGTTCTA TTCCTCCTGC AGAATATGTA 
GCTCTCTTCG ATTCATTTTT ATCCGCCGTC CATAAGGATT GTCCCAATAC AGCCGTGTTT 
ATCATACCCG GAAACCATGA CTCCGCCGAA AGGCTCTCCT TCGGCTCTAA AATCTTAAGT 
TCGAGTAATA TCCACATTGC TGCAGGCATC GGCAAATTAT GCTCACCTAT CATTATAGCA 
CAAAATGGAG AAAAAGTTCA ATTTTTTTTA ATGCCTTTTT TACATTTAGG CTCATTTTCC 
GAAGAAAATT CGGAGTTAAA GTTGACATCT CAATCCGAGA TGGCTCAAGA AGCCTCCCGC 
CGCTTAAAAG AGGCCGTAGA CCCCTCAATG CCTTCGGTTT TGGCAGCCCA TATTTTTACC 
CTAAACGGAG AAAGCTCCTC CTCTGAAAGA GCTTTTTTAG GTACTGCGGA ATATGTTTCG 
CCCGCTCTAT TTGATTTTTT TACCTATACG GCCTTGGGCC ATTTACACAA AATGCAGAAA 
GTTACCGACA GGATGTACTA TTCCGGAGCC CCCCTTACAT ACGCCTTCGA TGAATGTTCA 
ACCGAAAAGG TTGTCCTATC CGTAGATGTA GATTGTAAAA CGCAAGGCTT CCCGGTAAGG 
GTCGAAAAAA TTCCGATTAG CCCATTGCGG AAAATGAGCC GTTTAGAGGG CAGTTTTTTC 
GAATTTTTTA ATACGGATAA ATTCGATGCC TATAAAGACG ATTTTTTAGA AATAAATCTC 
ACAGGTTCTG CCGTCATTCA AAGCCCGATG AGCCTTTTGC AGCAAAAATT TCCATATCTT 
TTAAACCTTC ATCAAGAAGC TGTCGCCGCC GAATTAAAAG ACGAGGAGCA AATTCATATA 
TTAAAAAAGA ATATTGAAGA CGAAGATGTC ATCTTCGAAA ACTTTATGCT TTTTGAAAAG 
ACCATAGACG AAGAGCCCTC CGCAAAAAAA CAGGAGCTTT TCAAAAGCCT TTGCAAAGAG 
CAGTTTACAT AA
 
Protein sequence
MKILHTADLH LGKSLYESPQ IERQKKMLDD IHKILLKDDY AALIIAGDIY DRSIPPAEYV 
ALFDSFLSAV HKDCPNTAVF IIPGNHDSAE RLSFGSKILS SSNIHIAAGI GKLCSPIIIA 
QNGEKVQFFL MPFLHLGSFS EENSELKLTS QSEMAQEASR RLKEAVDPSM PSVLAAHIFT 
LNGESSSSER AFLGTAEYVS PALFDFFTYT ALGHLHKMQK VTDRMYYSGA PLTYAFDECS 
TEKVVLSVDV DCKTQGFPVR VEKIPISPLR KMSRLEGSFF EFFNTDKFDA YKDDFLEINL 
TGSAVIQSPM SLLQQKFPYL LNLHQEAVAA ELKDEEQIHI LKKNIEDEDV IFENFMLFEK 
TIDEEPSAKK QELFKSLCKE QFT