| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TC0850 |
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| Symbol | sctL |
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| ID | 1246218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Chlamydia muridarum Nigg |
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| Kingdom | Bacteria |
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| Replicon accession | NC_002620 |
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| Strand | + |
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| Start bp | 986636 |
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| End bp | 987343 |
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| Gene Length | 708 bp |
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| Protein Length | 235 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637061663 |
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| Product | type III secretion system protein |
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| Protein accession | NP_297223 |
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| Protein GI | 15835464 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1317] Flagellar biosynthesis/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02499] type III secretion apparatus protein, HrpE/YscL family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.136096 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGGCTTTGC CAAAGGATCC CCACCTCGTC AAAAGGATGA AATTTTTCAG TTTAATATTT
AAAGACCAAG AGGTCGTCCC GAATAAAAAA GTTCTCTCTC CAGACGCCTA TACTACCGTG
TTAAATGCCC AAGAACTTCT AGAAAAAACA CAAGAAGATT GCGATGCTTA CACACAGCAT
ACGCATGAAG AATGTGCAAA TCTCCGAGCA GAAGCAAAAA ATCAGGGATT TCAAGAAGGG
AGTGAGGCTT GGAGCAAACA GCTCGCCTTT CTCATTACAG AAACACAGGC TATGCGAGAC
CAAATCAAAT CCTCTCTCGT GCCTTTAGCT ATTGCAAGTG TGAAGAAAAT TATCGGTAAG
GAATTAGAAA CAAAACCTGA GACCGTAGTA TCTATCATTT CAGAGTCTTT AAAAGAGCTC
ACACAAAACA AGCGGATCGT GATTCATATA AATCCCCAGG ATCTTGCCAT TGTCGAGCAA
CATCGCCCAG AGTTAAAAAA ACTCGTAGAA TATGCTGATG TGCTTTTACT CTCTCCTAAA
GCTAGTGTGT CCCCCGGAGG ATGCATTATT GAGACTGAGA CTGGCATCGT GAATGCTCAG
CTTGATGTGC AACTAGCCGC CTTAGAACAA GCTTTCTCCG CTGCCTTGAA ACAAAAACAA
CCTACAGAAA CCTTTTCAAC CGATCAGACT CAAAGCAAAG AAGGCTAG
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| Protein sequence | MALPKDPHLV KRMKFFSLIF KDQEVVPNKK VLSPDAYTTV LNAQELLEKT QEDCDAYTQH
THEECANLRA EAKNQGFQEG SEAWSKQLAF LITETQAMRD QIKSSLVPLA IASVKKIIGK
ELETKPETVV SIISESLKEL TQNKRIVIHI NPQDLAIVEQ HRPELKKLVE YADVLLLSPK
ASVSPGGCII ETETGIVNAQ LDVQLAALEQ AFSAALKQKQ PTETFSTDQT QSKEG
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