| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_1112 |
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| Symbol | |
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| ID | 3775062 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | - |
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| Start bp | 1129444 |
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| End bp | 1130385 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637799538 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_400129 |
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| Protein GI | 81299921 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.0997976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.952064 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGATC GCCTGCAACT AGAAATCACA GAAGTGCCTT CTGAGCGGCT CGATCGTTGG
CTTGCCCAGC AGTGGCCGCA TCTGTCGCGG GCACGCCTCC AGAAACTGAT TGCAGCGGGT
CAGCTGCGGG TCAATGGAGA AGTCTGTGAT CAGAAGCGCT GGCAGCCGCG TTTGGGCGAT
CGCCTCGAAC TGGAAATGCC TCCGACGGAA GCAATCGCGC TAGCCCCTGA AGAGATTCCC
CTCGACATCC TTTATGAAGA TGCTGACCTA TTGATCGTCA ACAAAGCCGT GGGGATGGTG
GTGCATCCGG CGGCGGGACA TGACACTGGT ACGCTCGTCC ATGCTCTGCT AGCCCACTGC
GGTGACTCCC TGACGGGCAT TGGTGGGGAA CAGCGGCCGG GTATTGTCCA TCGTCTAGAC
AAGGACACCA CAGGGGCGAT GGTGGTGGCG AAAACAGAAG CCGCCCTGCT GTCTTTACAA
GATCAAATCC GCCAGAAAAC CGCCCAGCGG GAATATCTGG GTGTGGTCTT TGGTTCGCCT
CGTCAAGATA GTGGCCAGGT TGAAGAGCCG ATTGGCCGCC ATCTGCGCGA TCGCAAACGA
ATGGCGGTTG TACCGATTGA ACGGGGCGGG CGTTGGGCAC TCACCCACTG GCAGGTCAGG
GAACGGCTCG GTAACTATGC GCTGCTGCAC TATCGGCTGG CAACGGGCCG CACCCACCAA
ATCCGCGTTC ACAGTCATCA CATGGGGCAT CCACTAGTGG GCGATCCGCT CTACGGCAAT
GGGCGATCGC TCGGGGTCAA TCTGCAGGGA CAAGCCCTCC ATGCCTGGCG ACTGAGTTTG
CAACATCCCC GCACGGGCGA GGTGATCGCG GTGGAAGCCC CACTACCGGC AGAATTTCAA
CGTCTGTTGC GTGTCCTTCG CGATCGGAGT GCCCAATCGT GA
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| Protein sequence | MSDRLQLEIT EVPSERLDRW LAQQWPHLSR ARLQKLIAAG QLRVNGEVCD QKRWQPRLGD
RLELEMPPTE AIALAPEEIP LDILYEDADL LIVNKAVGMV VHPAAGHDTG TLVHALLAHC
GDSLTGIGGE QRPGIVHRLD KDTTGAMVVA KTEAALLSLQ DQIRQKTAQR EYLGVVFGSP
RQDSGQVEEP IGRHLRDRKR MAVVPIERGG RWALTHWQVR ERLGNYALLH YRLATGRTHQ
IRVHSHHMGH PLVGDPLYGN GRSLGVNLQG QALHAWRLSL QHPRTGEVIA VEAPLPAEFQ
RLLRVLRDRS AQS
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