| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Synpcc7942_0672 |
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| Symbol | |
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| ID | 3775655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Synechococcus elongatus PCC 7942 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007604 |
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| Strand | + |
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| Start bp | 666887 |
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| End bp | 667849 |
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| Gene Length | 963 bp |
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| Protein Length | 320 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 637799084 |
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| Product | RNA polymerase sigma factor SigD |
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| Protein accession | YP_399691 |
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| Protein GI | 81299483 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 0.194136 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAAAA CTGAAACCCC TACCTCCGAC TTAGTCCGCA CCTACCTCCG TGAAATTGGT
CGGGTGCCCC TGCTGACCCA TGAAGAAGAG GTTGTACTTG GGAAGCGGGT ACAGCAATGG
ATGAAGCTGC AGGAACTCCG ACAGACACTG CAATCAGAAG AGGGCGATCG CGATCCTAGT
GATCTGGAGT GGGCTGCAGC AGCAGGGCTG TCGATCGAGG AGTTGCGTCA GCAACAGCAT
CTGGGCGAGC AGGCCAAGCG CAAAATGATC GAGGCGAATC TGCGCCTTGT CGTTTCCGTC
GCCAAAAAAT ATCTGAAACG CAATATGGAC CTCTTGGATT TGATCCAAGA AGGGACGATC
GGCATGCAGC GCGGCGTCGA GAAATTTGAT CCGACCAAAG GCTATCGCTT TAGTACCTAC
GCCTATTGGT GGATTCGCCA AGCAATTACA CGGGCGATCG CGGAAAAAGC ACGTACGATT
CGGCTGCCGA TTCACATCAC CGAAAAGCTC AACAAGATCA AGAAAATGCA GCGTCAGCTG
TCACAGCAGC TAGGTCGCAC GGCGACCTTG CCGGAACTTG CTGCGGCACT GGACCTGACT
CCAGCACAGG TGCGTGATTA CCTCGAAAAA GCCCGGCATC CCTTGTCCTT GGATTTGCGC
GTCGGTGATA ACCAAGACAC CGAGTTGGGT GACTTGCTAG AAACCGACTG CACGACGCCG
GAAGAGTTTA CCCTCCAAGC TTCAATGCGT CGGGATATCG ATCGCCTCTT GGATCAATTG
ACTGAGCAAC AGCGACAAGT GATTGCCCTG CGCTACGGAC TTGAGGATGG CCAGGTGATG
ACCCTCGCCT CAATTGGCGA TCGCCTGCAA ATCAGTCGCG AGCGTGTGCG TCAGTTGGAG
CGTGAAGCGT TGCATACCCT GCGCCAAGCT CGATCGCAAG TGCAGGAATA CTTGGCTAGC
TAG
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| Protein sequence | MAKTETPTSD LVRTYLREIG RVPLLTHEEE VVLGKRVQQW MKLQELRQTL QSEEGDRDPS
DLEWAAAAGL SIEELRQQQH LGEQAKRKMI EANLRLVVSV AKKYLKRNMD LLDLIQEGTI
GMQRGVEKFD PTKGYRFSTY AYWWIRQAIT RAIAEKARTI RLPIHITEKL NKIKKMQRQL
SQQLGRTATL PELAAALDLT PAQVRDYLEK ARHPLSLDLR VGDNQDTELG DLLETDCTTP
EEFTLQASMR RDIDRLLDQL TEQQRQVIAL RYGLEDGQVM TLASIGDRLQ ISRERVRQLE
REALHTLRQA RSQVQEYLAS
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