Gene Synpcc7942_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSynpcc7942_0002 
Symbol 
ID3774222 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus elongatus PCC 7942 
KingdomBacteria 
Replicon accessionNC_007604 
Strand
Start bp1262 
End bp2134 
Gene Length873 bp 
Protein Length290 aa 
Translation table11 
GC content59% 
IMG OID637798407 
Producthypothetical protein 
Protein accessionYP_399021 
Protein GI81298813 
COG category[S] Function unknown 
COG ID[COG3881] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.106351 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.0651956 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGCAATGT CCGACCAGCC TGAAGAACTG CGGGTTAGCG ACCTTCTCAA TCGACAAGTT 
CTTGATCGCC AAACCACGGA TGAACATGGC CGCATCGATC GCGTCTGGAT GCATCCGCCA
GCCCATCGCG TTTTGGGGTT TCTCTGCAAG CAAGGGCTCA TTCGTGGAGA GTTTTCTGCC
TTTCGGCTCG ATCAACTCCA TGCCCTCGGC GATGACAGCG TGGTGTTAGA AGCAGCGCCA
CAGCCTGCCA ATCCCGAGAA AGTCGATCGC CTCGAATCAC TCCTCCAACA CGAAGTCTGG
ACCGATGCCG GTTTGCATGT CGGCAAAATT GTTGATTGCC GCTTCGATCG TCAGACGGGC
TACATCAGCG CCTATCTGGT TAGCCCCCAC GGTTGGCGGG GTGTGGCTGG CATGCTTTGG
GATCTCGACC CGCAGCTGGT CTTGAGCTAT GGCCAAGCGC GGGTTTTGGT GGCGGAACTC
GATCCAGAAA CGCTGCCGGT CTATGAAGCG GGATTGACGG AAGCGGTTGC TGGTTCCGAA
CCGGACTATC GGCATCTGTT GGGCGATCTA CGCCAGCGGG CGCGCCACTG GAAGCAAGAG
CTGAAGCTGC AAGTCAGCAA GGTCAAGGAA CAAGCGCAGG AAGTATTAGC GCAAGTCCAA
GAAGTGCGGG AGCAAGTCCA GCAGCCCTTG GATTGGGAGG ATGCCACCCC ACAGCCTCTC
ACCGCGATCG CAGAGGATGA GGAAGATTGG GATGCGGCGG AGACCGCTTT ACAGCCATTG
CCGGAATTGC GCCCTAAATC AGCCGCGATC GCCCCGCCAG CACAGCCCCT GATTCCGCCC
GAGGCTTGGG ACGACGACGA CCCGTGGGTC TAA
 
Protein sequence
MAMSDQPEEL RVSDLLNRQV LDRQTTDEHG RIDRVWMHPP AHRVLGFLCK QGLIRGEFSA 
FRLDQLHALG DDSVVLEAAP QPANPEKVDR LESLLQHEVW TDAGLHVGKI VDCRFDRQTG
YISAYLVSPH GWRGVAGMLW DLDPQLVLSY GQARVLVAEL DPETLPVYEA GLTEAVAGSE
PDYRHLLGDL RQRARHWKQE LKLQVSKVKE QAQEVLAQVQ EVREQVQQPL DWEDATPQPL
TAIAEDEEDW DAAETALQPL PELRPKSAAI APPAQPLIPP EAWDDDDPWV