Gene Syncc9902_1880 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSyncc9902_1880 
Symbol 
ID3742938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSynechococcus sp. CC9902 
KingdomBacteria 
Replicon accessionNC_007513 
Strand+ 
Start bp1804897 
End bp1805469 
Gene Length573 bp 
Protein Length190 aa 
Translation table11 
GC content52% 
IMG OID637772075 
Productphycobilisome polypeptide 
Protein accessionYP_377881 
Protein GI78185446 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCAAATA ATCTGGAGCT GAAGCAGTTG ATCGCATCAG CTCAGGTGTT GGGTCTACAG 
AACGATTCTT CTCTTCCAGC TTTTGATCGC CAAATTTTGC GAATGGCGGA TGAAGAGAAA 
CGCGCCCTAT CACCCACAGA AATCCAACAC ATTTGTCAAA CCTCGAAGGT TGATGCTCAG 
CTCATCGAGC AGCTCCAGAG CCAAGCCAAT CACCTGGTGC AGCAAGCACG TGAGTTCCTT 
GTAAAAGAGC AGCCGCATCT CGTTCAATCG GGCGGTGCGC TTTTCCCATC AGAACGGGCT 
GAGGCCTGCT GGAGAGACTG CTGGCAGTTC TTTCGCGTGA TCGTTTATGC CATTGCGTGC 
AAACGCCCCC TGTTCACAGA CGCAGAAGGA ATGGGAGCTT TGCGTGCCCT ATACGCCCAC 
GTCGGGGTGC CGATCGAAGG TCTCAATATT GCCCTCAAAC AGCTGAAAGT CCTTTCAAGA 
CAGGAGATTT CAGGCGCAAT CGAAGCTCCA CTCCTTAGCG AATCATTTGG GCACTTGCTC 
GAGGAACTCA ACAAAACTGG CGTTAAGTCC TGA
 
Protein sequence
MPNNLELKQL IASAQVLGLQ NDSSLPAFDR QILRMADEEK RALSPTEIQH ICQTSKVDAQ 
LIEQLQSQAN HLVQQAREFL VKEQPHLVQS GGALFPSERA EACWRDCWQF FRVIVYAIAC 
KRPLFTDAEG MGALRALYAH VGVPIEGLNI ALKQLKVLSR QEISGAIEAP LLSESFGHLL 
EELNKTGVKS