Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Syncc9902_1724 |
Symbol | |
ID | 3742958 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Synechococcus sp. CC9902 |
Kingdom | Bacteria |
Replicon accession | NC_007513 |
Strand | + |
Start bp | 1660890 |
End bp | 1662008 |
Gene Length | 1119 bp |
Protein Length | 372 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 637771916 |
Product | pilus retraction protein PilT |
Protein accession | YP_377726 |
Protein GI | 78185291 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGATCAGC CGGTCTTTCC CCCCAGCTTT CCGCCGCGCA CAGCCGGCAC CTCAGCCAGT ACCCCATCTC CAACAACGCC CTCACCGGAG GTGCGGGGGG GAACAGGCTC CCTATCCCTG GAAGCCATCC TGCGCACCGC CCATGACGCA GGACATTCGG ATGTCCATCT TGGTGTGGGG GAGCGTCCAC GCTTTCGCGC GCGTGGCGAG ATTCAAACCA CCGATTGGCC CGCCACCGAT GACAGGGTGT TTCAAGGATG GCTCCGTGAA ATTCTCTCTC CGCAGCAAAT CGATTCGTTT TATCGCGACA AAGAACTCGA CAGCGCCTTT GCCTTTCCCT TCGTGCGCGT GCGGATCAAT TTGCTCGACT CATTGCGTGG CCCAGCGATG GTGCTGAGGC TCATCCCTCA AACCATCCTC AGCTTGGAGC AGCTCAACCT TCCAGAGGTT CTCAAGGATC TGGCAGCCCG CCCCAAAGGA CTCGTTCTAA TTACAGGGCC GACTGGGTCT GGGAAAAGCA CAACCTTGGC CGCGATGATC GATTGGATCA ACCGCAATAA AACCTGCCAC ATCCTCACCA TCGAAGATCC GGTGGAATTT GTGCATGAAA GTCAAAAGTC CCTGATTCGT CACCGCGAAG TGGGTTTAAA CACCCTGAAG TTCCATCACG CCTTACGAGC AGCCCTGCGG GAAGATCCAG ATGTGATCTT GGTGGGAGAA ATCCGAGACC AGGAGACCCT CTCAACAGCG CTTGAAGCAG CTCAAACCGG TCACCTGGTA TTCGGAACGT TGCACACCAA TTCGGCGGTC AAAACCGTCG AACGGGTGCT CGGAATGTAT GCACCTGACG AACAACCCAG CGTCCGCCGA TCACTCTCTG AATCCTTATT AGGTGTCATT TCTCAGGGGT TGATTCGCAC CAACGACGAG AAGCGCGCTG CTTATCAAAA ATCCTCGTCA ACACAGATGC CTGCCGGGAT TACATCCAGC GAGGCTCCCT GGACGAGGTC GAGGAAATCA TGGCGCGTAG CAGCTTCGAT GGAATGGTCA CATCGAATCA ATCGCTTCAA GCGCTTGTCG AAACGGGACG GGTCGAATCA GAACAGGCAA TTGCCGTGA
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Protein sequence | MDQPVFPPSF PPRTAGTSAS TPSPTTPSPE VRGGTGSLSL EAILRTAHDA GHSDVHLGVG ERPRFRARGE IQTTDWPATD DRVFQGWLRE ILSPQQIDSF YRDKELDSAF AFPFVRVRIN LLDSLRGPAM VLRLIPQTIL SLEQLNLPEV LKDLAARPKG LVLITGPTGS GKSTTLAAMI DWINRNKTCH ILTIEDPVEF VHESQKSLIR HREVGLNTLK FHHALRAALR EDPDVILVGE IRDQETLSTA LEAAQTGHLV FGTLHTNSAV KTVERVLGMY APDEQPSVRR SLSESLLGVI SQGLIRTNDE KRAAYQKSSS TQMPAGITSS EAPWTRSRKS WRVAASMEWS HRINRFKRLS KRDGSNQNRQ LP
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