Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4520 |
Symbol | |
ID | 6118876 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5468357 |
End bp | 5469286 |
Gene Length | 930 bp |
Protein Length | 309 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641636082 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001762866 |
Protein GI | 170728840 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.152397 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGATTTAA ATCGCGTGCA GATGTTTGCT CAGGTTGTTG AGCAGGGCAG TTTTACCGCA GCGGCTAAGG TGATGGGGTT AACTAAGGCG ACGGTGAGTC GTAAGGTTGC TGAGCTTGAA GCCGATGCCG GTGTTCAGTT GCTATTTCGT ACAACGAGAG CTCTTAAGCT TACCGATGCA GGTAATGCTT ATTACAACCG GGTACATCGC ATATTGGCCG ATTTACAAAG TGCAGAAGAT CAGCTCAGCT CCAATCAACA GATGGTGAAA GGAAACCTCA ATATTGTCTG CCCTATTGAG TTGGGACAAC TATTTCTTGG TAGGGTGTTT GCTCAGTTCT TGACTCACTA CCCGGATATC ACCATAGATG CGGAGCTCAC CAATCGGAAT GTTGATGTGG TTGCTGAGGG AGTAGATGTA CTGTTTCAGA TCACCTCTAT GTCAGATCCC AGTCTGCAAA CTTACGAGAT GATAAATACA GATAAGATGC TGATGGCTAG TCCCTCTTAT CTTGCTCGCA ATGGCACCCC TAAAGTGCCG CAAGATCTTA GCAAACATAA AGCGATAAAA TTAAAATCGA CCCATATTGA TGGAAGTTGG ACGCTGTTCG ATGGGAAAGA GTGGGTTACC CAAGAGCCTG AGGCACAGTT AACGGTGAAT AATGTGACCT TAGCGCGTGA AGCGGCCATT GAAGGTCTAG GGATAACCAT AGTGCCAACT CTTATTGCAC AGCAGGCATT AGATGAGAAG CTGTTACTTC CTCTTCTTGA AGATTACCCT CTGGCGCAAA CTAAAATAAC CATGAGTACG CCTCAACGGG CTTATCTACC GCGAAAGTAT CAGGTATTTA TTGAGTATAT TTATCGGGCG ATGAGCCGAA ATCCTGAGTA TCAGCTGCTG GAAGTGCCGG ATTTTGTCTC ATTAAATTGA
|
Protein sequence | MDLNRVQMFA QVVEQGSFTA AAKVMGLTKA TVSRKVAELE ADAGVQLLFR TTRALKLTDA GNAYYNRVHR ILADLQSAED QLSSNQQMVK GNLNIVCPIE LGQLFLGRVF AQFLTHYPDI TIDAELTNRN VDVVAEGVDV LFQITSMSDP SLQTYEMINT DKMLMASPSY LARNGTPKVP QDLSKHKAIK LKSTHIDGSW TLFDGKEWVT QEPEAQLTVN NVTLAREAAI EGLGITIVPT LIAQQALDEK LLLPLLEDYP LAQTKITMST PQRAYLPRKY QVFIEYIYRA MSRNPEYQLL EVPDFVSLN
|
| |