Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4313 |
Symbol | |
ID | 6118668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 5219665 |
End bp | 5220609 |
Gene Length | 945 bp |
Protein Length | 314 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641635876 |
Product | LysR family transcriptional regulator |
Protein accession | YP_001762661 |
Protein GI | 170728635 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000168555 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 46 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACTG AAGATATCGC CCTGTTTCAT CGTATTGTAG AAACTGGCAG TCTAGTGGAA GCGGCCGATC TGCTTAATCT ACCCAAATCT ACCGTGAGTC GTCGTTTGCA GATCTTAGAG GACGATCTCA ACATCAAGTT ATTTCATCGC CAGAGTCGTT CTATGACGTT AACGGCGTCG GGCAGCCATT TTTACGATAA AACCTTGTCC ATTTTAGGGG ATCTTGAGCA GACCCTTGTG GAGTTGACCG ACACGGAAGC GGAGATCGAT GGGCACCTAC GCATTCTTAT CTTTCCAGTG CCTGAGTTAC TCGATATTGC CAACGGCATC TTTGACTTTA TGGATCATAA CCCTGAGCTA ACGGTGGAAC TGATTGTTAG CACTGAGCCT CAAGATATGA TCCGCAACAA TATCGATCTT GCCTTTATGG TCGAGGATTC ATTTAATGAA AATGAGATGG TGGCTCGAGA GATGATAACT GAAGAGCTGC ATTTTGTTGC TAGCCCAGAT TATCTGGCTA AAGCGGGAAC GCCTGTGTTA CCTGAAGATC TCGCAAAACA TAACTCAATT CTGTTTCGAT ATCCTAATGG GCGAATTTTC AATGAGGTGC CATTTGGCAA CGACATGAAA ATCGCAGTGA AGGGAAACTT ATGCCTCAAC AGCATTCAGC TCTGTTTAGA GGCGAGTTTA ACTGGACGTG GTATCGCCTT TCTTCCCATA GAGTTGACCC GAGATCACGT TGAGCGTGGT GAGTTAACCA TGTTGTTTGA AGATGTAGAG CCCTATGTGG GCAAGTGCTA CTTAGTTTAT CCCTCAAGGC GCTTTATCAG CCTAGCCAGT CAGCGATTTA TCGATCATAT GATGAGTGCC CTCGAAAGCT GTAATGCAGG AAAAGGCTGT GGTCGTGAAG AGAGGTTACG TGGCTCTATT AAGTCTTGGA TATAA
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Protein sequence | MKTEDIALFH RIVETGSLVE AADLLNLPKS TVSRRLQILE DDLNIKLFHR QSRSMTLTAS GSHFYDKTLS ILGDLEQTLV ELTDTEAEID GHLRILIFPV PELLDIANGI FDFMDHNPEL TVELIVSTEP QDMIRNNIDL AFMVEDSFNE NEMVAREMIT EELHFVASPD YLAKAGTPVL PEDLAKHNSI LFRYPNGRIF NEVPFGNDMK IAVKGNLCLN SIQLCLEASL TGRGIAFLPI ELTRDHVERG ELTMLFEDVE PYVGKCYLVY PSRRFISLAS QRFIDHMMSA LESCNAGKGC GREERLRGSI KSWI
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