Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_4151 |
Symbol | |
ID | 6118502 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 5051023 |
End bp | 5052069 |
Gene Length | 1047 bp |
Protein Length | 348 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 641635713 |
Product | porin |
Protein accession | YP_001762502 |
Protein GI | 170728476 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00169518 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.241214 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAAA CACTAATCTC TGCATCAGTA GCATCTGTAC TTACACTGGC TTCATTCGGC GCGCTAGCCG ATGGTCCTAA CTTCTATGGT CGTCTAGATC TTTCTGTGAC TAACTCTGAT AAGAGCAGCA CACTTCAAAG TGGTACTAAC GGTGCAGAAG TAGGCGAAAG CGGTACATAC CTAGAAAACA ACTTCTCACA CGTGGGTGTT AAGGGCAGCG AAAGCCTAAC TAGCAACATC GACGTGATCT ACCAGATGGA GTTCCAAGTC GAGAACACTT CTGGCTCTGG TGACGTATTT AAGGCTCGTA ACACTTTCCT AGGTCTTAAA TCTACAGCAG GTACCGTACT TGTTGGTCGT AACGATACAG TATTTAAGCA AGCTGAAGGT GGCGTAGATA TTTTCGGTAA CACTAACGCC GATATCGATC GTCTAATTGG TGGCCAAACA CGTTCTTCTG ACGGTATCTG GTACTACTCT CCAAAGATCG CTGATTTAGT GACATTAAAC GCAACTTACC TGATGGAAGA TAACCAGACG GATAAAGCGG GTAACCGAAT TGACGAAAAC CAATATGCAC TTAGTGCAAC TATCGGTGAC AAGAAGCTTA AAGCACAAAA CTACTATGTA GCTGCCGCAT ACAACACTGT AGGCGGTATT GATGCTTACC GTGGTGTTGC TCAAGTCAAA CTTGGTGATT TCAAAATCGG TGGTCTATTC CAGAATACTG AAAGCCAAAC AGACTCAGCT CAGGAAGGTA ACTCTTACTT CGTAAACGTG GCATACAACC TAAACGGCGT TAACCTAAAA GCTGAATACG GTAAAGATGA AGCTGGTTTC GGTAAGTACT ACAAAAACAT CACTGATGTT GAAGGCACTG ACGTAAACGT TCAGTCAATC ACTGTAGGTG CTGACTACAA GGTATCTAAA TCAACTATGG TTTACGGTCA CTACGCTATG TATGAAGGCG ACCACAAAAC TGCAGCTGGT AAAGTTAACC TAGAAGATGA CAACGTATTC ACAGTTGGTG TACGTTACAA CTTCTAA
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Protein sequence | MKKTLISASV ASVLTLASFG ALADGPNFYG RLDLSVTNSD KSSTLQSGTN GAEVGESGTY LENNFSHVGV KGSESLTSNI DVIYQMEFQV ENTSGSGDVF KARNTFLGLK STAGTVLVGR NDTVFKQAEG GVDIFGNTNA DIDRLIGGQT RSSDGIWYYS PKIADLVTLN ATYLMEDNQT DKAGNRIDEN QYALSATIGD KKLKAQNYYV AAAYNTVGGI DAYRGVAQVK LGDFKIGGLF QNTESQTDSA QEGNSYFVNV AYNLNGVNLK AEYGKDEAGF GKYYKNITDV EGTDVNVQSI TVGADYKVSK STMVYGHYAM YEGDHKTAAG KVNLEDDNVF TVGVRYNF
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