| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_3939 |
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| Symbol | |
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| ID | 6118288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 4800681 |
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| End bp | 4803734 |
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| Gene Length | 3054 bp |
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| Protein Length | 1017 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641635500 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_001762291 |
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| Protein GI | 170728265 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.719926 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAACA TAACGATAAG AAATTATATT AAGGGACTTG AAATGCGACG TACTAATTTT
AAGAAAAGCG TTCTAGCAAC GAGTATTGCC GTTGTTTTGA CCAGTAGCTC ACCTTCGCTT
GCGATTGCTG CCGAAGAGAC TAATGCTGAT GATAATATTG AGATCATTGA AGTTACTGGT
ATTCGAGCCA GTTCTAAAGC CAGCATAAAC CAAAAACGTT TTGCCACATC GCAAGTTGAT
GGCATCACAG CGGAAGATAT CGGTAAACTA CCAGATGTCA CCATTGCTGA TTCACTGCAA
CGTATTACTG GTGTTCAGAT CACCCGCTCT GCTGGTGAAG GCGGTACGAT AGCCATTCGT
GGTTTGCCTC AAGTTGGCAC CACAATGAAT GGTGAGGTTT TCTTAAGTGC GACGACCATC
GACACCTCTG GCGCTAACTT TGGCGACCTT CCTGCACAGC TTTTCTCTGG TCTTGAAGTA
TTTAAGAGTG CTGAAGCTAG CCGCAGTGCT AAAGGTATCT CAGGCTCTGT AGATCTAAAA
ACACGTCGTC CTTTCGATAT GGATACAGGC TGGACTTTTA ATGCCGCAGC TGAAGCGAGT
CAAGGTTCAA TCAGTGAAGA GACAGATCCT AATTTCAATG GGCTTGTTAG CTTCAATAAT
GACAAGTTTG GTGTGCTATT TTCTGCAGCA AAGCAGCAAG CGACGCTAGC CACAGATTAT
AATGGATATT TTGATACCTC TGAAGATGGT GGTATCGGTG CAGCAAATAA CAGTCACACT
TGGGGCGCTG GTCCTAACAG TGGTGATATT CGCCACGTTG TACCACAAGG CTTTGCTGCA
TTTAATAAGC AGGAGGAGCG CGACCGTGAT GCGTTCCAGC TCTCTGTTCA AGCAGACTTA
GGTGAAGGCT TCACCTTAAC GGCTGATGCG TTCTACTCTA AGCAGGAACG CTTTAATAAT
CGTAGTGGTT TCTCGCAAAA TAACCGCTGG CAGTCATTCA ATGACTATGC CTTCCCAAGC
GATGGTTTTA CCGACGATGC TCCTTTTACC GATGATGATG GCAATGAGTG GCGTGGCGTT
AATGCGTTCG ATATGAAGTC TTACCGTATG CAGTCGTTTA CTCAGGTTAA TATCAATGAA
GAGGAGTCGC AGAACTACAA CCTGCAGCTT GATTACGACA ATGGCGGAGC GCTTACAGGT
GGCGTGCGTA TGACACGCGC TAAAGCTGAA GCTTCAATGC GTCACGCTTA TGGTGAAGGT
GATATCTTAA GCATTGACCA AGGAACACTT GTTACCGGTC CTGGTGGTCT TGCACCTGCC
AGTTACTGTA ATAATGGCGA AGAGATTGTG GGCGACCAAG GTGGATGTTT CGCACAATAC
TCTCAAGGCA TTCAAGATCA GTTTATGCTG AACTATGATG CTCGCGGTGA GCATCCTCAC
TTCTCCGGTT TTAACCAGAT GGTTAATGGC GGTAAAGGGA TGCGCTCTGT AGGTGACTAT
ATGTCAGACC TCGACTCCTA CCATGTTGGT GCGTTCTCCT CTGAAGGTAA TACCGATGAT
GTTGGTGAGA TCAACACCTT TAGTACTGCT TGGAACTACG CGTTTGATGA TATGCCATTT
ATCACGAGTG TTGATTTCGG TGTTCGTTAT GAAGAGCGTA AGGTCGACCA TGACCAATTT
ACCTATACCT CTGAATTTGG TGGTGGGTGT GATATTGCAC AGTGGAAAGC CGTTGACCAA
TTCTATGGTG ATGAGTGTGT CGGTGTAGAT GGCGCTGGTG AGATGGTAGA TGGTGAATGG
ACACCTTATA CACTACTTGC ACCGACCCGT CTTGATGAGC ACACAAGTGT TTCATACCAG
ACTGATTTTG GTAATGTCAC AGGTATTCCA GGTGTTTGGG TGATAGATCC TGAGAACTTC
CGCGACCCAC GTCAGTTCCA AAAAGATGTG TTTGGTAATG TTCAGCGAGT TGAAAATGCT
GGTCGTACCT ACGATGTTAA CCTAAATGAG TTTAGCTACT TCCTACAGGC TAACTTTGAA
GAGGGGATCT TCAGCGGTAA CTTCGGTGTG AAAGTGGTGG AAACTGAGCA GTATGTTAAG
CAGAACTTAG TTGGGCCTAG CTTACCCCAC TCAGGTTTGA ACCCAGATAT CGGAGATGTG
GTTACTGAGC GTGATTATAC CGATGTATTG CCATCGATTA ACGTTGCTGC AGCGGTTACT
GATGATGTGA TTTTGCGTGC TGCCTACGCG AAAAACATGA TGCCGCTTAA TTTAGGTGCA
CTTGGTGGCG GTAAATCTGT CGGTAAGGTA TTTAATGAAG AGTGTGGTTG TTTACGTGTT
GTAGAGGGCA GCTTAGCGGG TAGCCCAGAT CTAGACCCTT GGCGCTCAAC CAACTACTCA
GTATCGGCTG AGTGGTATAA CGGCGATGCC TCTATGATGT TTATCTCAGC CTTTAACATC
GACATTGAGA GCTTTGTTGG TTCTGGTACT GTGATGATCG ATGAGCCTGA TGATGATGGT
GTTAAACGTG GTCCTTGGCC TTTTTCTACA CCAGTACAAG CTGAAGGCGG AAGCATTAAA
GGGCTAGAGC TTGGTGCTCG TGTGGCTTTT GATGATTTCA TCGATGTACC AGTACTATCT
AACTTTGGTC TAGATGCTAA CTATACCTAC TCAGATAGTA CCCAAGACAG TGATCTTGCA
AAAGATGTCT ATGGTAGTGA CTTACCTTTC CCTGGCATGT CAGAAGATAC CTACAACTTT
GTACTTTGGT ATGAACAGGA GGACTTCTCT ACACGTCTGG CTTGGAACTC AGTTAGCCCA
CGTTTAATCA CAACTGGCGG TGCTGGTGTT GGTGGACAAA CTCTGTATCA AGATACTTAC
TCACAACTTG ATTTCAGTGC AACGTACAAC CTGAATGAGA TGTTTAGCTT CTATGTTTAT
GGTTCTAATA TTCTTGAAGA GTATCAGCAA ACTTACCTAG AAAACTCATC TCAAAAGGCG
TTCCAGAATG TCTATGAAGC GCGTTGGACA TTAGGTGCCC GCATGACATT CTAA
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| Protein sequence | MSNITIRNYI KGLEMRRTNF KKSVLATSIA VVLTSSSPSL AIAAEETNAD DNIEIIEVTG
IRASSKASIN QKRFATSQVD GITAEDIGKL PDVTIADSLQ RITGVQITRS AGEGGTIAIR
GLPQVGTTMN GEVFLSATTI DTSGANFGDL PAQLFSGLEV FKSAEASRSA KGISGSVDLK
TRRPFDMDTG WTFNAAAEAS QGSISEETDP NFNGLVSFNN DKFGVLFSAA KQQATLATDY
NGYFDTSEDG GIGAANNSHT WGAGPNSGDI RHVVPQGFAA FNKQEERDRD AFQLSVQADL
GEGFTLTADA FYSKQERFNN RSGFSQNNRW QSFNDYAFPS DGFTDDAPFT DDDGNEWRGV
NAFDMKSYRM QSFTQVNINE EESQNYNLQL DYDNGGALTG GVRMTRAKAE ASMRHAYGEG
DILSIDQGTL VTGPGGLAPA SYCNNGEEIV GDQGGCFAQY SQGIQDQFML NYDARGEHPH
FSGFNQMVNG GKGMRSVGDY MSDLDSYHVG AFSSEGNTDD VGEINTFSTA WNYAFDDMPF
ITSVDFGVRY EERKVDHDQF TYTSEFGGGC DIAQWKAVDQ FYGDECVGVD GAGEMVDGEW
TPYTLLAPTR LDEHTSVSYQ TDFGNVTGIP GVWVIDPENF RDPRQFQKDV FGNVQRVENA
GRTYDVNLNE FSYFLQANFE EGIFSGNFGV KVVETEQYVK QNLVGPSLPH SGLNPDIGDV
VTERDYTDVL PSINVAAAVT DDVILRAAYA KNMMPLNLGA LGGGKSVGKV FNEECGCLRV
VEGSLAGSPD LDPWRSTNYS VSAEWYNGDA SMMFISAFNI DIESFVGSGT VMIDEPDDDG
VKRGPWPFST PVQAEGGSIK GLELGARVAF DDFIDVPVLS NFGLDANYTY SDSTQDSDLA
KDVYGSDLPF PGMSEDTYNF VLWYEQEDFS TRLAWNSVSP RLITTGGAGV GGQTLYQDTY
SQLDFSATYN LNEMFSFYVY GSNILEEYQQ TYLENSSQKA FQNVYEARWT LGARMTF
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