Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3824 |
Symbol | |
ID | 6118173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4660786 |
End bp | 4662765 |
Gene Length | 1980 bp |
Protein Length | 659 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 641635387 |
Product | diguanylate cyclase |
Protein accession | YP_001762178 |
Protein GI | 170728152 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGTCTCT TGCTCCTAAT ATTATTTCTC TTCAGTACCT TTGGTCTCGC CGCACAACCT AACTCTACTT TTTCACGAAA CTTAAATAGC ATAGAAGAGC AACTCTACTC TCTACCTTTT AGGGCTCAAG CCCGCTTGAT AGAGATGGAA GAGGTTGACT TAAAAGAGAA GCAACCTATA CCACTACTTG TTCGCTACTT TACTCTCAGG GCCAGTGCCG CCCTACAGCT CAATGAAGCT GAGCAGGCTA TCAAGGCCGC AGAAAAAGGA CTTAAGTATG TAAAAGGTAA GCCTGAATTT AAAGCGGAAC AATTTCAGCT CCAACTCAGA TTCATTCAAG CTCTGTTGAT GCAAGGTAAA AACCAATTGG TTTTGTCACA ACTGAACAGC CTGCTTGAAG CTACCGAGTC TTTTAACGAT CCGGCCACCA CAGCTGAGAT CCTATTAGTA AAAGCTCAGG CATATAGAGA TAACGGGGAG TATGACATCT CCATGGCTGC CATGATGAGT TCATTAGAAA CGGCAAAGCA AGCCGATGAT CAGGTATTAC TTAAGCGTAT CTCATCAAAT TTAGGTGCAG TCTTACTGAG TCTCAATGGC TTCGATAAAG CAGAATTACT ACTGGAGCAG TCTTATCTCT TTTTCAAGCA ACGAAAAATG TCCTTTAACC AGTTACTGGT AAAAATGGAT ATCGCAGAGC TAGCCAAGAA GCGGGGACAA GATAAAAAAG CGATACATGA GTACCTTAAA GCACTGAATT TAGCTCAGGT ATTAGGGGAT GGTTTTCACC GCTTTCGCAT CAATCTATTA ATAGCAGAAC TCCTGTTCGA CAGGGGAGAA ACTGAGCGAA TGAAACAATA CTTACAGGCT AGTGAAGTCT TAAGTGAGCG AGAAAACACC CGCTACTTCA TCAGCAAATT CAACCTACTT AAGGTTAACG AAAAACTTAT AAATAACAAC TACCAAGAGG CATTAGATCT CCTCTCTACA CTGCTTCCCA AACTCAATAA ATATAGCTCC CTCTATCGTT CAGAGCTGCA ACTGCATTTG GCGGCCTCCA AAACGTATTA TGGCTTAGGG GACTTTGAAA ATGCTTACCT TACCCTACTC AATTACCAAG AAAGCTTTAA TCAATTTAGT GCTGATGAGC AGCTTGAAAA TCTAGAAAGA CAGAAACTAC TCTATAAATT GGAGCGACTA AAAGCTGAAA ATCAGCAACT GAGCTGGAAC AATGTGCTGC ACACTTTAGA GCTGGAAAAC AGTGAAGATG AGATTGAATA CCTCAATATA CTAATATTCT TTGCTATTGT TTCCGTAAGC TTAACCTCAT TAGCGGCACT CTGGATCAAT CGTCGCCGGA TCCGCTGGGG CAAAATAGCC AATACAGACA GTCTTACCAA CCTCTACAAC CGACGCTATC TATCCCATAA ATTACTGAGT CTTAATAAGC CAGATAACGA CGCCCCTCTA TCATGCATAT TGTTAGATAT TGACCTTTTT AAAGTGGTTA ATGATTCATA TGGCCACATA GTCGGTGACG AAGTACTGGT TAAAGTCGCT ACGCTATTTA TCAATAATGT CAGAGAGAAA GATATCTGTG CCCGAATTGG CGGTGAAGAG TTTATGATCT TACTCCCCAA TACAAACTTA CAGCAAGCAT CAGATATCGC AGAAGATCTT CGGCTAAAGA TAGAAAGCTT ACACTTTGCC TCTCTCAAAG GTGAGCCTTT CACTATCACA TCTAGCTTTG GAGTCGTTGA GGCAGGTAAA GAGCAAAGTT TCTCCGAACT ATCCAATGCG GTGGATCTGT TACTTTATAC CGCTAAACAA AATGGTCGCA ATCGTGTCGA AACAGGAACG CCTAAATTTA CAAACTCCCA GGAGATGGAA CAGGGACATA GTAAAATGGC ACAACAACTT GCGAACTTAA AACGTAAAGC GCAACGACTA CTCTTTATGC TAACTCAACT TATCAAGTAA
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Protein sequence | MRLLLLILFL FSTFGLAAQP NSTFSRNLNS IEEQLYSLPF RAQARLIEME EVDLKEKQPI PLLVRYFTLR ASAALQLNEA EQAIKAAEKG LKYVKGKPEF KAEQFQLQLR FIQALLMQGK NQLVLSQLNS LLEATESFND PATTAEILLV KAQAYRDNGE YDISMAAMMS SLETAKQADD QVLLKRISSN LGAVLLSLNG FDKAELLLEQ SYLFFKQRKM SFNQLLVKMD IAELAKKRGQ DKKAIHEYLK ALNLAQVLGD GFHRFRINLL IAELLFDRGE TERMKQYLQA SEVLSERENT RYFISKFNLL KVNEKLINNN YQEALDLLST LLPKLNKYSS LYRSELQLHL AASKTYYGLG DFENAYLTLL NYQESFNQFS ADEQLENLER QKLLYKLERL KAENQQLSWN NVLHTLELEN SEDEIEYLNI LIFFAIVSVS LTSLAALWIN RRRIRWGKIA NTDSLTNLYN RRYLSHKLLS LNKPDNDAPL SCILLDIDLF KVVNDSYGHI VGDEVLVKVA TLFINNVREK DICARIGGEE FMILLPNTNL QQASDIAEDL RLKIESLHFA SLKGEPFTIT SSFGVVEAGK EQSFSELSNA VDLLLYTAKQ NGRNRVETGT PKFTNSQEME QGHSKMAQQL ANLKRKAQRL LFMLTQLIK
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