Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3787 |
Symbol | |
ID | 6118136 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4621326 |
End bp | 4623581 |
Gene Length | 2256 bp |
Protein Length | 751 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641635350 |
Product | TonB-dependent receptor |
Protein accession | YP_001762141 |
Protein GI | 170728115 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4772] Outer membrane receptor for Fe3+-dicitrate |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000153626 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 1 |
Fosmid unclonability p-value | 0.00000099878 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATAATCA ATCCCATTAA CATTAAGTGG GATGGTTCGA CGTTCATACC TAATACGGAG CACCTAATGT CACACCGTAC GACGCTATCT TTAAGTCTAA TTTCAACGGC ACTCTTTACA GCACTTTCAC CTCAGGTCAT AGCGCAAGAG ATAGACTCTC AAGCGACCAT TGAACAGATA AGTATCTTCG GTGAACGTAA CCCACTTAAT ACCGTTCCTG GCAGTGCACA TCAAATTGGC CAAGCCGAGT TAGATACCTT CAAATACACA GATATCATGC GCACCCTATC CAGCGTACCT GGTGTCTATA TTCAAGAGGA AGATGGTTAC GGTTTAAGAC CCAATATAGG TATGCGTGGT ACTGGCCAAA ACCGTTCAGA AAAGATCACC ATCATGGAAG ATGGCGTACT GGCAGCACCA GCACCCTACG CCTCACCTGC CGCCTATTAC TTTCCAACTC CAGGCAGAAT GCAGTCTATT GAGATCCTAA AAGGTAGCTC TACCGTCAAA TATGGTCCAA GAACCACAGG CGGTGTACTC AACATGATCT CTCGTCAGAT CCCTGAAGAG GAGTTAGCTG GCCAGCTAGA TATTGCGGCA GGTCAAGATG GCTTTGGCAA AATACACGCT TATGCTGGTG GTCAAGGTGA GCGTGTCGGC GCCGTAGTGG ATCTCTACCG CTATCAAGCC GATGGGTTTA AAGATATCAA TGGCGTTGGT GGTGACACAG GCTTTGAGAA AAATGATGCG CTGGCAAAAG TGAGCATTCG CTCAGCTGAG GGCGCTCAAT ATGAGCAGAT AGTCGAGTTT AAACTTAAAT ATTCAGATGA AGTATCCAAC GAAACCTACA TGGGGCTAAC CGATGCTGAC TTTGATGCAA CCCCCTATGC ACGTTACTCT GCTTCGCAAA AAGATGTAAT GAATACCGAG CATAAACAGC TGCAGATCAA TCATATCATC GATTTCAGCG ATAACCTCAC CTTAGGCACA ACCGCCTATT ACAATGACTT TGCCCGTAAC TGGTATAAAG CCGATAAAGT AGACGGCTTA AAACTGAGCA AAGGTGGTGT TGAGGCTGCA TCAGCGTTTG ATAAAAATCC AGCATCTGCT CCAATGGATG TGCGTGTTAA AGCAAACAAC AGAAGCTACA TCTCACAAGG TATTCAAACA GAGCTTAACT GGTACCTAGA TAATCACGAC CTTGCCTTTG GTGCACGTTA CCATGAAGAT GAGATGGACA GATTCCAGTG GGCCGATCAT TATGCATTAG ATGCTAATCA GGTAATGACT CGAACCGAAA GTGGCCTTCC AGGTAGCGAC TCGAACCGCA TCGACAGCGC AGAAGCTATT GCGCTCTACG TTCAAGATAA GATCCAGCTA GGCGATTTTA ATATTACCGC AGGACTTCGC TATGAAGATG TGAAGACCAA CCGTACCGAC TGGGGTAAAG AGAACAGCGG ACGTGATGGT GAGCCAAAGA AAGATATTGA TAACAGTTTT TCAGCAACCT TGCCTTCACT TTCGGTAACC TACCAGATAA ACAGCGATCT GCTGGTATTA GCTGGTGTTC AAAAGGGCTT TGCTCCGGCA TCTCCAGGCA ATGCTGATAA AGTAGAAGAG AAGAGCTGGA ACTATGAAGC TGGTGCCCGC TATAACAGTG GCGAATTTAG TTCAGAGGCG ATCTTTTTCT ACAGTGACTA CAGCAATATG CACGGCGAAT GTACCGCTTC TAAAGGCTGT GATGATGAAA ATATCGGTGA CCAATACAAT GGCGGTGAAG TCGATGTTAA AGGGTTGGAG CTAAGTCTTG GCTATAGCTT TAACACACAA AACGATATCA GCTTCCCAGT AAAACTTGCC TATACCTATA CTGACGCTGA GTTTGCCAAC AGCTTCGATT CAGATTTCGA TCCTTGGGGC AACGTTGAGG AGGGTTATAA ACTTCCCTAT ATAGCAGAAA ACATGCTTTT TGCATCAGCT GGAGTTAAAT CTGATAACTG GGAACTAACG TTAGCCGCAC GTTACACCGA TGATATTCGT ACTAAAGCTG GCGAAGGTGA GATTGCTCAA GAGAACCTAA TCGAAGCTAA AACTATCGTC GACCTATCGG GCCGTTACTT TATCAGTGAA GCACAGGAGC TTTACCTCAC AGCTGAGAAC CTTTTCGATA AAAAATATGT CACTTCGAGA GTATACGGTT CCAACTTTGT AGGTAAGCCT ATGACAGTCT CTGTCGGCTA TACGTATAAA TTTTAA
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Protein sequence | MIINPINIKW DGSTFIPNTE HLMSHRTTLS LSLISTALFT ALSPQVIAQE IDSQATIEQI SIFGERNPLN TVPGSAHQIG QAELDTFKYT DIMRTLSSVP GVYIQEEDGY GLRPNIGMRG TGQNRSEKIT IMEDGVLAAP APYASPAAYY FPTPGRMQSI EILKGSSTVK YGPRTTGGVL NMISRQIPEE ELAGQLDIAA GQDGFGKIHA YAGGQGERVG AVVDLYRYQA DGFKDINGVG GDTGFEKNDA LAKVSIRSAE GAQYEQIVEF KLKYSDEVSN ETYMGLTDAD FDATPYARYS ASQKDVMNTE HKQLQINHII DFSDNLTLGT TAYYNDFARN WYKADKVDGL KLSKGGVEAA SAFDKNPASA PMDVRVKANN RSYISQGIQT ELNWYLDNHD LAFGARYHED EMDRFQWADH YALDANQVMT RTESGLPGSD SNRIDSAEAI ALYVQDKIQL GDFNITAGLR YEDVKTNRTD WGKENSGRDG EPKKDIDNSF SATLPSLSVT YQINSDLLVL AGVQKGFAPA SPGNADKVEE KSWNYEAGAR YNSGEFSSEA IFFYSDYSNM HGECTASKGC DDENIGDQYN GGEVDVKGLE LSLGYSFNTQ NDISFPVKLA YTYTDAEFAN SFDSDFDPWG NVEEGYKLPY IAENMLFASA GVKSDNWELT LAARYTDDIR TKAGEGEIAQ ENLIEAKTIV DLSGRYFISE AQELYLTAEN LFDKKYVTSR VYGSNFVGKP MTVSVGYTYK F
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