Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3477 |
Symbol | |
ID | 6117809 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 4251741 |
End bp | 4252622 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641635030 |
Product | polyprenyl synthetase |
Protein accession | YP_001761838 |
Protein GI | 170727812 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.171034 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00323812 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGCTAGCTC AAGCCACAAC CCAATACCAA CAACGCGTTG ATAACCAGCT TACACAGGTT ATCGATGCTC AATCTGTGAC AGACTCTCAA CTACTGGCAG CAATGAAACA TGGTGCCCTG ATTGGCGGGA AGCGTATTCG CCCTTTTCTG GTTTATGCCA TAGGTGAGAT GCTCAATGTT CCACAGGAAA AATTAGATGC AGCTGCAGCG GCCATAGAGT GTATACATGC CTACTCTTTA ATCCATGACG ATCTACCCGC CATGGATGAT GACGCCCTGC GCCGTGGGCA ACCAACGGTT CATGTTGCCT TTGATGAAGC AACGGCTATT TTGGCAGGTG ACGCCCTACA AGCCTTAGCA TTCGATATTT TAAGTCAACC CATTGATGGC CTAACACCCA CACAGAATCT GGCGATGGTT CGCGCATTAG CCAAAGCCTC CGGTTATTCT GGAATGTGTG GTGGACAAGC GATGGATCTC AACGCAACCG ATAAGCAGAT AGATTTAGCC ACCCTGACCC AACTACACAA ACTAAAAACA GGTGCCTTAA TCCGCTGTGC TGTCGAACTG CCAATGATCG CCGCTGACCT GCCAAAAGAT GAGCAGGCAC TACTAATGAC TTTCGCCGAT GCAGTTGGCT TAGCTTTTCA GGTACAAGAT GATGTGATTG ATATCATCTC CAGCACCGAA GAGCTGGGAA AACCTCAAGG CTCAGATTGT GATTCCAACA AGAGTACTTA CCCAAAACTA CTTGGATTAG ACGGTGCAAA AGCCACCGCC GAGAGTTTGA TACAAGATGC TCTATCAGCG CTGACAAAAT TACCATACAA TAGTCAGCTA ATTGCCGAAT TCGCCCGTTT TATCATTGAG CGAAGAGTAT AA
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Protein sequence | MLAQATTQYQ QRVDNQLTQV IDAQSVTDSQ LLAAMKHGAL IGGKRIRPFL VYAIGEMLNV PQEKLDAAAA AIECIHAYSL IHDDLPAMDD DALRRGQPTV HVAFDEATAI LAGDALQALA FDILSQPIDG LTPTQNLAMV RALAKASGYS GMCGGQAMDL NATDKQIDLA TLTQLHKLKT GALIRCAVEL PMIAADLPKD EQALLMTFAD AVGLAFQVQD DVIDIISSTE ELGKPQGSDC DSNKSTYPKL LGLDGAKATA ESLIQDALSA LTKLPYNSQL IAEFARFIIE RRV
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