Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3315 |
Symbol | |
ID | 6117636 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 4060115 |
End bp | 4063408 |
Gene Length | 3294 bp |
Protein Length | 1097 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634860 |
Product | peptidase S41 |
Protein accession | YP_001761679 |
Protein GI | 170727653 |
COG category | [S] Function unknown |
COG ID | [COG4946] Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000987383 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAACCTC GCCTCTCGCT TGTTTGCACC CTATTGGCAT TCGGTGGTCT AAATTTTTCG ACCGCGATTG CATCAGAATC GACAGCACTT CCTGGTTACT ACCGAGCTCC AGCGCTGAGT GAAAATACGT TAGTTTTTAC CGCTGAGGGC GATCTCTGGA CTAAGCAGAT GGGTGAGCCG CAAGCGCAAA GGTTAACGAG TTTGCCTGCA CAGGAGTTAG GGGCAACCAT CTCTAAAGAT GGTAAGTGGG TGGCTTATGT CGCCAACTAT GAGGGGACCA GTGAGGTCTA TGTTATCCCG ATAGCGGGTG GTCAGGCCAA GCGAGTCAGT TTTGAAAATA GCCGTGTTCG GGTTCAAGGC TGGACAGCTG ATGGCAAAGT GCTTTACGCC ACTGATAACG CTTTTGGTCC GGCTAACTAC TGGGTATTAA GAACGGTTAA CCCCGAGACA TTAGAGGCTC AAGATCTACC ACTAGCCGAT GCCATTGAAG GGGCAATTGA TGATAAAGGC GAGTACCTTT ACTTTACCCG TTTTGGCCTG CAAACCACAG GGGATAATGC CAAGGTCTAT CGTGGCGGTG CTAAGGGCGA GTTATGGCGT TATAAGCTCA ATTCAGATCA AGAGGCGCAG TTATTAACCA GTGCTCATCA AGGCTCTGTT CGTCAACCTA TGTTGTGGGA CAACCGCCTC TATTTCATCA GTGATGCAGA TGGCAATGAT AATTTCTGGT CGATGGCACT CGATGGCACT GATATTAAAC AGAGCAGTGA TTTTAAAGAG TGGTCGGTAC GTGGAGCACG CCTAGATAAC GGCAAGATAG TGTTTCAGCA AGGGGCTGAC ATTAAGCTGT TTGACCTGAG TAATCATGAA AGCCGCACTT TGGATATTCA ACTGGTTTCT GACTTTCCCC ATCGCCGTGC TCACTGGGTC AATAGCCCGA TGAAGTATGC GACCTCTACT CAGCTTTCAC CTGAGGGAAA TAAGGTTGTT ATCACCGCAA GAAGTCATGT TGCGATAGCG GGAACCGATG GCTCCCGCCT TGTTGAGTTA GCACTTCCCG GAAACAGCCG AGTGCGATCT GCAGTGATGA GCCCAGACGG GAGCTGGGTG TATGGGATAA GCGATGCATC GGGAGAGCAG GAGATCTGGC GCTTTCCTGC CGATGGCAGT CAGGGGGCAA AGCAGCTAAC TAAAGATGGC ACGACTCTAC GGATGGGGAT TAAGCTCTCG CCTGATGGGC GTTATATCGC GACCGATGAT TACAATGGTG ACCTTTGGCT ATTGGATCTT AAAAGAAACC GCACCAAAAA AATCATTACT CAAGGTGAAG GCTTAGGTCC CTATGCCGAT GTGGTCTGGT CGGGGGATAG CCAATACATC GCCGTGACTA AATTTGAGTT AGGCACACCA AGGCCGCAAG TGGTGCTCTA TTCATTGGAT GATGATCGAA GTGAAGCTTT AACCAGTGAT AAATATGAGT CATATGCACC CGCATTTAGC CCTGATGGTC AGTGGCTATA TTTTCTCTCA GACCGTCAAT TTAGCTCAAC ACCTACCTCA CCTTGGGGCG ATCGTAATAT GGGACCCATG TTTGATAAGC GCACTGAAAT ATTTGCTTTA GCCTTAGATA AAGATGCCAA GTTCCCATTT CGTCAACCAG ATGAGTTAAC TCAAACAACA TCGGTTGGTA AAGAGGATAA AGCAGCGGGC ACTGCGGACG TTAAAGTCGA TTGGAGTGGT CTGGGTCAGC GTTTATGGCA GGTGCCAGTT GCTTCGGGTA ACTATTCTGC GCTTAAGGTG AACGATAACG GCCTCTATTT TATCGATCAG GCTCCGGGCA AAGAGAGTGT ACCGGGCCTT AAAGTGGTTA AGTTTGACCC ATTATCACCA AAGGTTGAGA CCTTTAGTGA GGATGTTGGC AGTTTTGGTC TTTCACGCGA CGGCAAGAAG CTCTTTATCC GTAAGCACAG CAAAGATGGT CAAGATATGT TGATAGTCGA TGCTGCTGAC AAGCTTCCTA AAAAATTAAC CAATGCCAAG GTACAGACTC AAGCGTGGCA GTTAGCGATA GAGCCTGCAC TTGAGTGGCA GCAGATGTTT GAAGATGCTT GGCTAATGCA CAGAGACTCC TTCTTTGATA AGCAGATGCG CGGTCTTGAC TGGCAAGCAA CAAAGCAAAA GTATCAGCCG TTGGTGGACA GATTAACGGA CCGACATGAG CTCAATGATA TCTTTAAACA GATGATGGGC GAGTTAGACT CACTGCACTC TCAGGTGCGT GGTGGCGATC TTCCTAAAGA TCTGGATATG GCAAAAGCGG CAAGTCTTGG TGCTCGTTTA GCGCAGACAA AAAATGGAGT AGCTATCACT CATATCTATG CTAACGATCC TGAGCTGCCA TCTCAAGCAG CCCCATTAGC CCAGATAGGT GTGGACGCTA AAGTCGGTGA TATCTTGGTG GAGATTAATG GCAAGAGTGT CACAAACCGC GCCGATGTGA CTCGCTTTTT AACAAATCAG GCTAAAAAGC AGGTGCTGTT GACCCTCAAG CGGGGCAGTA AACAGCACAA GACCATCGTC AAACCTGTCT CTCCTGGTCG TGATGCCAAG CTTAGATATT TAGATTGGGT TAATTCAAAC GCTGAGAAAG TGAGTGAGGC CTGCGACGGA GAGTTTGGTT ACCTGCACCT GTATGCCATG GGCAGCGGTG ATATTGCCAG CTTTGCCCGT GAGTTTTATG CCAACTACGA TAAAGCGGGT CTTGTGATTG ATGTTCGCCG TAATCGTGGT GGTAATATCG ATAGTTGGAT TATTGAGAAA TTACTGCGCA GAACATGGGC TTTCTGGCAG CCAACTCGTG GTACTCCAAG TACTAATATG CAGCAAACTT TCCGCGGACA CTTAGTGGTG TTGACCGATC AATTGACCTA TTCCGATGGT GAAACCTTCT CTGCAGGTGT TAAGGCCCTC GGGATCGCCC CACTTATTGG TAAGCAAACC GCTGGAGCCG GTGTCTGGCT ATCTGGCCGA AATTCATTAA CGGATAAAGG GATGGCTCGG GTCGCTGAAT ACCCTCAATA TGCGATGGAT GGACGTTGGG TGCTGGAGGG GCGTGGAGTC AGTCCTGATA TTGAGGTTGA TAACTTACCC TATGCGACTT TTAAAGGTGG TGATGCTCAA TTAGAGCGTG CCATTAACTA TCTCAAAGAG GAGCTGGTAC AAGCGCCTGT TCTTCCCCTG AAGGCTCAAC CAATTCCAGC TAAAGGGATG GCTCAGGATA TTACTCGTCA ATAG
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Protein sequence | MKPRLSLVCT LLAFGGLNFS TAIASESTAL PGYYRAPALS ENTLVFTAEG DLWTKQMGEP QAQRLTSLPA QELGATISKD GKWVAYVANY EGTSEVYVIP IAGGQAKRVS FENSRVRVQG WTADGKVLYA TDNAFGPANY WVLRTVNPET LEAQDLPLAD AIEGAIDDKG EYLYFTRFGL QTTGDNAKVY RGGAKGELWR YKLNSDQEAQ LLTSAHQGSV RQPMLWDNRL YFISDADGND NFWSMALDGT DIKQSSDFKE WSVRGARLDN GKIVFQQGAD IKLFDLSNHE SRTLDIQLVS DFPHRRAHWV NSPMKYATST QLSPEGNKVV ITARSHVAIA GTDGSRLVEL ALPGNSRVRS AVMSPDGSWV YGISDASGEQ EIWRFPADGS QGAKQLTKDG TTLRMGIKLS PDGRYIATDD YNGDLWLLDL KRNRTKKIIT QGEGLGPYAD VVWSGDSQYI AVTKFELGTP RPQVVLYSLD DDRSEALTSD KYESYAPAFS PDGQWLYFLS DRQFSSTPTS PWGDRNMGPM FDKRTEIFAL ALDKDAKFPF RQPDELTQTT SVGKEDKAAG TADVKVDWSG LGQRLWQVPV ASGNYSALKV NDNGLYFIDQ APGKESVPGL KVVKFDPLSP KVETFSEDVG SFGLSRDGKK LFIRKHSKDG QDMLIVDAAD KLPKKLTNAK VQTQAWQLAI EPALEWQQMF EDAWLMHRDS FFDKQMRGLD WQATKQKYQP LVDRLTDRHE LNDIFKQMMG ELDSLHSQVR GGDLPKDLDM AKAASLGARL AQTKNGVAIT HIYANDPELP SQAAPLAQIG VDAKVGDILV EINGKSVTNR ADVTRFLTNQ AKKQVLLTLK RGSKQHKTIV KPVSPGRDAK LRYLDWVNSN AEKVSEACDG EFGYLHLYAM GSGDIASFAR EFYANYDKAG LVIDVRRNRG GNIDSWIIEK LLRRTWAFWQ PTRGTPSTNM QQTFRGHLVV LTDQLTYSDG ETFSAGVKAL GIAPLIGKQT AGAGVWLSGR NSLTDKGMAR VAEYPQYAMD GRWVLEGRGV SPDIEVDNLP YATFKGGDAQ LERAINYLKE ELVQAPVLPL KAQPIPAKGM AQDITRQ
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