Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3132 |
Symbol | |
ID | 6117451 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | + |
Start bp | 3841073 |
End bp | 3842137 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 641634677 |
Product | lytic transglycosylase catalytic |
Protein accession | YP_001761498 |
Protein GI | 170727472 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00437573 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAGCCAA CTCTTCTTGT CTGCTTTACC CTTCTATTAT CTCCCCTTAT CTGTCATGCA GTCCAACTTA GCGACTATGA TGCGGATGTT GCCGCCCTGC TGCTTGAGTA TCAAGGAGAT GGTGACGTTG CAGCGCTACT TAGGAAGTAT CAGGGAACCA CTGCAAGCTC AGCCATGGCA AGGCCATCGG TACTCACCAT CAAAGAGCAA GGTGACGCCA GCACCTATGT GGATTTCGAG CGGGGTATCA TCTTAATCGA AACTCCAGAC AAAGCTTTGC TGAAAGAAGC TATCGTGCAG GTTTTACTCA CTCAAATTGA CCCTAAGCTT ATCGACGCTA AAACTGCTCA AGACTTTGGT TTAATCAATA AGGGAAAGAA GCCTTTTTTC TGGGGACAAA TACACGATCA TCAAGGAGAA GCAATTGAGT ACTCCTGGCG GGCAGAGCGT TTTGCGGATT ATCTCATCAA GCACAAGCTC AGCCAAGACA GTCGTGTCAG AGTCGCCATA CATATGGTAG CCGAACATAC CAAGATAGCT GGAGGGAAAT ATATTCACTA CGCTCAAGCC GCAAGCCGAC GTTATGGAGT ATCAACCGAA CTCATAATGG CCATTATGGA AACGGAAAGC TCATTTAACC CTATGGCCAG ATCCCGCTCT AACGCCCTAG GCTTAATGCA GGTCAAAGCC AATACCGCGG GACGTGATTA CTTCTCTTTA ATTAAGGGTT ACAAACACAC CCCCTCTTCT GCATACCTTT ATGATCCACA AAAAAATATC GATCTTGGTA CTGGTTACCT ACAGATATTA TCAAAGCGCT ATTTAGCAGG CATTAATCAT CCTAAAAAAC TGGAGTATGC CATGATCTCA AGCTACAACG GTGGCAGCGG CAACCTATGG AAAAGTTTAG ATCCTCAAGC AAATCGCACT AAAGCGATAG CCCGGATCAA TAAGATGAGT GTTAGCGAGT TTTATTGGTT TCTCACCAAC AGACATATCA GGGGAGAGAC CCGCAACTAC TTAAAAAAGG TTAGCAGTAA ACAAAAGAAA TATGCTCACC TGTAA
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Protein sequence | MKPTLLVCFT LLLSPLICHA VQLSDYDADV AALLLEYQGD GDVAALLRKY QGTTASSAMA RPSVLTIKEQ GDASTYVDFE RGIILIETPD KALLKEAIVQ VLLTQIDPKL IDAKTAQDFG LINKGKKPFF WGQIHDHQGE AIEYSWRAER FADYLIKHKL SQDSRVRVAI HMVAEHTKIA GGKYIHYAQA ASRRYGVSTE LIMAIMETES SFNPMARSRS NALGLMQVKA NTAGRDYFSL IKGYKHTPSS AYLYDPQKNI DLGTGYLQIL SKRYLAGINH PKKLEYAMIS SYNGGSGNLW KSLDPQANRT KAIARINKMS VSEFYWFLTN RHIRGETRNY LKKVSSKQKK YAHL
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