Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_3072 |
Symbol | |
ID | 6117387 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3763122 |
End bp | 3764972 |
Gene Length | 1851 bp |
Protein Length | 616 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 641634614 |
Product | hypothetical protein |
Protein accession | YP_001761438 |
Protein GI | 170727412 |
COG category | [S] Function unknown |
COG ID | [COG4805] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000286308 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000500018 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAAGAAAA CATTACTTGC GATTTCAATA GGTCTAGTTG TCGGTTTAAC AGGCTGCTCC GACAGTGAGA AAACAACAGA CAGTACCGTT TCTACGGTGA CCGAGCCTGA ATTGCAAGGG GGAGACAAAG TATCCGTTGA AGATGCTCAG CAAAAAGCTC AGCAAGCCTA CCTCGCTTTA GTTGATCAAT TCTTTAAAGA TAATCTTAAA CTAGAACCTA TCAGCGCGAC CTTTGTCGGT GTGAATGATT ATAACGATCA ATTTGGTGGG GATCTGACAG AGGAGTATTT AAAGGCGCGT CATGAGCTCA ATACTCGTTA CCTTAAACAG ATAGAAGATA TTGATCGTAG TCAGCTCCCT GCTGAGCTAC AACTTAGTTA TGACATGTTC GCTTATAACA GAAATATCGC CTTGGTCGAT GAGACCTTCC CGAATCGTTT TATGCCGATG AATCAATTTT ATAGCACTGT GATCAGCATG GTTCAGCTTG GCAGTGGCGA GAGTGCTCAG CCCTTTAACA CTGTAAAGGA TTACCAGAAT TGGGCTTCTC GCCTTTCAGG CTTTATCGCT TGGACTAAGC TTGCTCAGGC CCGTATGGAT GAAGGAATTA AGAGTAAAGT TGTTTTACCG AGAGTATTAG TTGAGCGAAT CATTCCTCAG CTTGAGGCTC AGCTTGTGGA TAATCCAAGT GACAGTCTTT TCTATGCGCC CATCAATAAC CTTCCTGATA ATTTTACTCA AGTGCAAAAA GAGGAGTTAA CTGCGCAATA TACAGCTCTT ATCCGTGATG AGCTTTTACC GGCCCTTACA TCATTGAAGG AGTACTTTGC TACAACATAT CTTCCTGTCG CCAGAGGAAC GGATGGTTGG TGGGGACTGC CAAATGGCAA AGTCTGGTAT CAGCATCTCG CGAACTCGCA TACAACCACC ACCATGCCGG TGGATGAGAT ACATCAGATA GGGCTCAGTG AAGTTGAGCG TATCCTATCA GAGATGGATA AAGTACGTGA GCAGGTTAAA TTTGAGGGGG ATTTAACGGC ATTTTTTGCT TCACTCTCAT CAGAGCCTCA ATACTTCTTT ACCGATCGCC AAGGCTTGAT TGACGGTTAT ATGGAGATAA AAGATAAAAT AAACGTAGAG TTGCCTAAGT ACTTCAACGT TATGCCAAAA GCCGACTACG TGGTTAAGCC TGTCGAGAGC TTCCGTGAGC AATCTGCAGC GGGTGCATCC TATGAGTCTC CAGCAGTCGA TGGTTCTCGC CCTGGGGTAT TTTATATCAA CACATATAAC CTTAAGGCTC AGCCAAAGTG GGGGATGACA ACGCTCTCGC TACATGAAGC AGCACCTGGA CACCACTTTC AAATAGCCAT AAAGCAGGAG TTAACAGGTG TACCTGAGTT CCAACGTTTT GGTGGTTACA CTGCATTTGA AGAGGGCTGG GCACTGTATG CTGAGTACCT AGGTATTGAG ATGGGGTTAT TTAGCGACCC ATATCAGTAT TTTGGTAAGT TATCAGATGA GATGCTTAGA GCGATGCGCT TGGTTGTAGA TACAGGTTTG CACTCTAAAG GTTGGACACG TGAGCAGGCT ATCCAATATA TGAAAGATAA CTCGCCGATG GCTGAGTCAG ATATCGTGGC CGAAGTTGAG CGCTACATGG CTATTCCTGG TCAAGCCTTA TCCTATAAAG TGGGTCAGCT TAAAATACTA TCTTTGCGAG CGGAGGCTGA AAAAGCCCTA GGAGATAAAT TTGATTTAAA AGGGTTCCAT GATCAAATTT TAACTTCAGG CTCACTCCCG ATGGCGGTGA TGGAGTCTAA AATTCATGAC TGGATCGAAA CGCAAAAATA G
|
Protein sequence | MKKTLLAISI GLVVGLTGCS DSEKTTDSTV STVTEPELQG GDKVSVEDAQ QKAQQAYLAL VDQFFKDNLK LEPISATFVG VNDYNDQFGG DLTEEYLKAR HELNTRYLKQ IEDIDRSQLP AELQLSYDMF AYNRNIALVD ETFPNRFMPM NQFYSTVISM VQLGSGESAQ PFNTVKDYQN WASRLSGFIA WTKLAQARMD EGIKSKVVLP RVLVERIIPQ LEAQLVDNPS DSLFYAPINN LPDNFTQVQK EELTAQYTAL IRDELLPALT SLKEYFATTY LPVARGTDGW WGLPNGKVWY QHLANSHTTT TMPVDEIHQI GLSEVERILS EMDKVREQVK FEGDLTAFFA SLSSEPQYFF TDRQGLIDGY MEIKDKINVE LPKYFNVMPK ADYVVKPVES FREQSAAGAS YESPAVDGSR PGVFYINTYN LKAQPKWGMT TLSLHEAAPG HHFQIAIKQE LTGVPEFQRF GGYTAFEEGW ALYAEYLGIE MGLFSDPYQY FGKLSDEMLR AMRLVVDTGL HSKGWTREQA IQYMKDNSPM AESDIVAEVE RYMAIPGQAL SYKVGQLKIL SLRAEAEKAL GDKFDLKGFH DQILTSGSLP MAVMESKIHD WIETQK
|
| |