Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Swoo_2834 |
Symbol | |
ID | 6117149 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella woodyi ATCC 51908 |
Kingdom | Bacteria |
Replicon accession | NC_010506 |
Strand | - |
Start bp | 3463865 |
End bp | 3464545 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641634380 |
Product | exonuclease RNase T and DNA polymerase III |
Protein accession | YP_001761204 |
Protein GI | 170727178 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.00375381 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | TTGCTGTCTC GCTACCTTTT AAAAAGTAAA CTCTGTTGGC GCGCCTTTCG GGCTGAGGAT CAAGCTCTTA AGACCTATTA CCACGGACAG CAATCCCTAC TGGAACTCGA CGTTGAGCGT GCCCCCTTGT TGGCTATCGA CCTTGAGATG ACAGGGCTCG ATGCCCAGTT TGATCAGATC TTAAGTATTG GTATCGTTCC GATCGAAAAG GGCAGACTTA TACTGTCAAA AGCTGAGCAT AAATTGGTGA AAATAGAGGG TAGTGTCGGT CAGAGTGCCA CAATCCACGG TATTTTAGAT CACCACCTTA ATAGCGCGGT ATCTCCAGAG GAGGCGATGA CCTGGTTTTT AGAACGATGC CAAGGACAGA TGCTGGTGGC TCATCACTCT CCCTTAGATT TGGCGTTTTT ACAAAAAGGG CTATCAACAC ATTTTCGCCA GAGAGTGACC TTGATGGCTA TCGACACCTT AGCGATAGAG AAGCGTAGAT TAATGCGTCA GCATGAAGTG CTCAAGGAGG GGGCTTTGCG ACTTGGAGCA AGTAGAGCGC GATACGGTTT GCCTGTTTAT GCGGCTCATA ATGCCTTGAT TGACGCCATA GCCTGTGGTG AGCTTTTGCT GGCTCAGATC AGTGCCATAG GCCAAGGCGA AAGTGTAAAA CTGACAGAGT TACTGGCTTA A
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Protein sequence | MLSRYLLKSK LCWRAFRAED QALKTYYHGQ QSLLELDVER APLLAIDLEM TGLDAQFDQI LSIGIVPIEK GRLILSKAEH KLVKIEGSVG QSATIHGILD HHLNSAVSPE EAMTWFLERC QGQMLVAHHS PLDLAFLQKG LSTHFRQRVT LMAIDTLAIE KRRLMRQHEV LKEGALRLGA SRARYGLPVY AAHNALIDAI ACGELLLAQI SAIGQGESVK LTELLA
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