| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Swoo_2508 |
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| Symbol | |
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| ID | 6116792 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella woodyi ATCC 51908 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010506 |
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| Strand | - |
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| Start bp | 3058881 |
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| End bp | 3063980 |
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| Gene Length | 5100 bp |
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| Protein Length | 1699 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641634025 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_001760880 |
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| Protein GI | 170726854 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0105853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAACG ATCGTAAGGC AGAGTTGATA TCTAGTGAGC AAGCGGCTGA ACAAAACTTT
TCTACCGATA ATGTCGTATC AGGTGGATGC ACTGAGTGTG GCTGTACCGC TCTGCTCCAT
TACCACTATG ACGATGGTAA GCCTGTCCCT GAAGCGCCTT TTATTCTTAC CGACAGTAAT
AACAAAGAGA TCCAAGGCAA GACAGATAAA AAAGGTTTAT GTCTTATTAA AGATATGGGC
TGTGGTGGTT TCGATATGCT TCTTGATGAG GGGAGTGATG ATTTCGAACC GCCCAAAACG
GTCATTAATA ACCCTGTAAT ACAAGATAAT CCTGAATATG CAGCACTGGC TGGAGAGTAT
TTTACTCTGT TTACCTTACT GCGTAATAAG GGGTACTTAG AGTATGACGC CAGCGACAGT
TCAGACAATG AAGTTGATGT CGATGACACC AGTTTTTTTA TGGATGTTGC CGATGAATAT
GAACCTGCCT ACAAACGGTT TTGGGAGCTT AACGATCAGA TTAATGATGG CAGTAAATCA
TTAAAAATTG CGATCAACAA AATTCACACC AGTCTGCCTG CAGAGGTTGT CAGTAAAGCG
GGCGATAACA GTGCAGTACT GCTTTTTTGC CAAGTGGCAG TTGGTTTTAT CCCTGTTGTG
GGCCAAGCGG TTGATATTTA TGACTTAGGT GATTGGGGCT GGCAAACTTA TCGATATGAG
GAAAATCGAA GTGATCCTTG GCATTGGGCT GCGGGTAGCT TAGCAGTTAT AGGCTTTATT
CCAGGCTTAG GTGATGCCCT TAAAAAATCT GGTAATGCCA TTATCAAAGC GATGAAAAAA
TCTGATTCAA AGTCGATTCA GTTTGCTATA AAGACACTAA GAGGCTTATC AAATGGCAAC
TTAGTCAAGT TTCTTTCGAC CTTCGAGAAG AGCATAAGAG AGAAGGGAAA AGATGCCATT
GCCCTGCTCA ATAAGATCAT CGATGGATTA AGACGTACTA TAGCGAATGC GGCTAAATCC
AGCTGGATAA TTCGTTTGAT GAAGGGGGCA TTTGAATCCT TAATCGACGT CATGATGAAG
CTGTCTAAAA AGATAGATGA GATGATTAGT TGGATCTGCA CTAAGGTCTC AGAGTTTATT
GGTAAAATCG TTACTAAAGT CAGTGGAACA CCTAGGCCTA AAGCAAGCAA AAAACCAAAA
GTGCAGGCCA ATGCGGGCAA AAATAGCGGT GAGGTAGATA ATGCTGGCGC TAAGGCTGAA
GTGGGTAAGA AAAATGGAGG AGTATCAAGT AAGGAGGGGG TGTGCACTAA AGGCTGCCCT
ATTGATATGG CAACCGGCTA TGTTGTCGAT TGGCGCACCG ATTTTACTCT TAACGGTCGC
CTCCCTTTAA TCCAAAAACG TTTTTATCAC TCTGCAGGCT TGATGCTACC TGGTTTATTA
GGCTCGCGTT GGCGAAGTAT TTGGGATATG AGCCTTGAGC TTGAAGGAAA ACAGGCGACT
TTCACCGATG AGCAATACAC TCAAGCGGTC TATCTTTTGC CAAAAGAGGG GGAGGAGAGC
CTTGCTGCTC ATCTGCCTGA ATGGCGTTTA ACACGACAGA ATAAGCAGTT GGTGATGCGC
CATGTGAGTG GCCTTATATA CTGCTTTGAT CATGCAATGG GCACGACCTT GCTGCTCACT
AAAATAAGTG ATGGTAAGGG CAACAGTAAT CACTTTCTCT ATGATCGCGG CACATTAAAG
CAGATTGTGT TAGCCGATGG TCAGCAAATT CAGGTGGATT GTCATCACCA CCGCATCAGC
AAGCTCACGT TACTTGATAG TGAGCTTAAT CCAATCCAGA CACTAGCCCG TTATGAGTAC
GATAGGCATG GACAGATGCT CAGTTGTCGT GCGGCGCCCG GTTGCAGTTT TGATTATCAA
TACAGTGAAG AGGGGTATCT GCTGCGCTGG TCTGATTTAA GTCAGACCTG GGTTGAGCAT
GATTATGATG ACAAGGGACG TGCTATTGCA TCGAGAGGCG CCGAAGGCCG CTTTAGCGAT
CAAATACGTT TTGATGATGC TAATCGCATC GTTTATTACA AGAGTGCTAT TGATGGGATT
CAACAGTATT ACCACGATGA GCGTAATAAT ATCGTGCGGA TCATCTTTCC TAATGGTGAT
GAAATACACA ATGAGTGGCT TGATAATCAG CTAGTAGCTC AAAGCAATGC CTTAGGGGAG
CGAACCGAGT TTAGCTACGA TGCGTGGGGG CAGGTAGAGC AGGTTATTGC AGCCGATGGG
AGTGTGACAT CCTATCAGTA TGACGATAAC GGCCGATTGA TTGGGCATAT TAACCCCCTT
GGAGCTACTT GGAAGTATGA GTATGACGTC CAAGGTAATT TAACTTGTAT GTCGGACCCA
CTTAATCAGC AGTGGTTTTA TCAATATACC AGTTTAGGTC AAGTGGCTTG GGTGATTTCG
CCCGAAGGAG CACAGACAGG TTATCAATAT AATGATTCTG GTCAATTAAC CGAGATCCTT
CCGCCTCTTG GTGAGAAGCT GATGCTAGAT TATGACGTCT TGGGGCGTTT ATCGACTCAA
ACTCGTGTGT CATCTGAGGC CTCTGTCGGT GAAGGGGTGG CAGCAGAGCG AAAACGAGTA
CAGCGGTGGC ACTATCAGGG GAGTTTGCCT TATCCAAGAG CGATCACCCA TGAGGATGGT
ACTCAAAGTG TTTATGACTA TGACATTGAG GGCAATGTTA CCCGCTTTAC CGACGCACTA
GGCCATCAAT TCCACTATGA GTATGGCGCC TTCGATAAGA TGTTGGCCAG TCTCGATCCC
CAAGGTGCTA AGACGCAATA TCGTTATAAT GGAGAGTGTC AATTTGAAGG TGTGATTAAC
AGTCAGCAAC AAGAGTGGTG TTATCACTAC AATACCAGTG GCCAAATTAT TGAGGAGCGT
CACTACGACG GTCGGATCAC CAAATTTACC TATGAAGGTG CAGGTCGTAT TAGCAGTAAA
ACAGCTGCCG ATGGTACAAG CCTGCACTAT TTTTATGATG CTGTTGGTCG ATTAACTCAA
AAACAGAGCC GCGATCTAGA TGCACGAATA ACTGGTAATA CCTATTTTGA ATATGATGAG
GCCTCACAGC TTCTCAAGGC TGAAAATGAC CATGCGCTTA TCGAGTTTGA GTACGATGAA
CTAGGAAGGC GCATAACTGA GCAATTAAAT GGCCATCGTG TTAGTAGTCA GTATACAAAT
ACTGGCCTAC GAAGCCGAAT CGAACGTGAG AACACCGAAG GAGAATCTTA CCATCCAGCA
GCTGATGCGA TTGAGTTTAA TTGGCAGCTA GGTCAACTGA AAGGTCTGCA GATAGGCGCT
TATCATCCGT TAGCGTTTTC CCATAATCAA TTAGGTCAAG AAACTAAGCG CAGCAATGGA
TTAGGTTTTC ATTTAGCTCA GCAACATGGA CCAGATGGAT TACTGTTAAA TCAGCAACTT
ATTCCTTCAG CTCATCATGC TGAGTCATTG ATGGGTGAAG GGAGCGAGCC GTTTAATAAC
GTACATCAAG CTACAGCAAG GGGCAAAGGT GACAGTCGTT ATCAGCATCT TCAGCGCAGT
TATCAATATA ACGCATTAAA TCAGATCAGC CAGATTGATG ACAGCCACTG GGGTCTCAGT
GAGTTTGAGC ATAACTCAGT AGGTCAAATT ACTCAGCATA AGCAATATGC CCCTGGGGTT
GAAAATGGGA CTGTAAAAGG GGCTGCAAAA GGCACAGCGC AGACAGGGCA AGCACAACAA
ACACAGGCAT TTAGCTACGA CAGTGAGCAA AACCTGACGC AATCGAGCCA AGTGTTATCT
GCCGATAACG GTAATGTGAT TGATTTTGTA CAAAAGCGAG TTGAAAAAGC ACTTAAGTAT
CAACAAGCAG GCCGAGTTGA GACCGTTGGA GATCATACCT ACCGTTATGA TGCTAATGGT
CGAGCGGTTG AGAAATGCAC CAGAAAAGCC GGCTTTAGGC CGCAAACTAC CTTCTACCAA
TGGGATGAGG AAGACCAACT CATTCAAGTG CGTCTTGCCA ATGGAGATTG CTGGCACTAC
CAATACGATC CTTTCGGTCG CCGTATTGCT AAGATAAAAC AGAGCACTAA GGAGCAAGAG
CTGCGAAATA CCCCCTCACA GTTTCGTTAT CTGTGGGACG GCAATAATCT TGTTGAACAG
CAAAAGTGCT ATGCCGATGG CACGCTGGCT CACACCACAC AGTGGGTCTA TGAGCCAAAT
AGTTTTAGGC CACTCGCTCA ATTAACTCAA AATCATGGTC AAAATTCACA GGAAACAGCA
GATAACTTAG CCTCAGAGCT GCACTATATA GTGACAGATC AGGCCGGCAC ACCGCGAGAA
CTCTGCACAG AAAACGGTGA CATAGAGTGG CGTGGTGAGC AAAGCTTATG GGGTGAGCAC
CATAAGTGGC GTCTCAGTGT CCAAGCAAAA AGTAAGCATA AAAAGTACCT TGAAGATGCG
GCAAATGATC CCGTAAACTG TGACCTTAGG TATCAAGGTC AAGTGTTTGA TTCCGAAACA
GGTCTGTATT ACAACCGTCA CAGATATTAT GACCCTGAAA CTTGCCAATA CTTAAGCCCA
GATCCCATAG GCATGGCGGG TGGACTAAGA ACCCAAGCCT ATGTACATAA CCCCATGGAA
TGGGTTGATC CGTTTGGGTT AGCAGCTTGC CCGACTGCAG AAGCTCCGCA GACTCACCAA
ATTAACAGTG CTGTAGACGC ACCAGAAGGT GCTGGTACTT ATAGCTTTAG AGATAATAGA
GGTAATCAAT ATACTGGTTC AACAAATAAT TTTAATTCCA GAATGGCTGA TCACATTAGA
GATGGCCGAT TACCACCGGG AAGAGAAGTT ACGTTTACTC AAGTCAATGC ACCAGGAAGA
ACAGAGCAAG GTGCTCGTCG AGTGAGACGT TTTTTTGAGC AGAAACAAAT AGGCCTTGAC
TCTGAAGGGG TTCCACTTCC CAATAAAACT TCTGGTTGGC GTTCGGTTTC TGCAGACAAA
TGGAGTACAT ATACTGATGG CAATGGTAAT ATCGATTTCA CAAACCCCTA TTTTAATTAA
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| Protein sequence | MSNDRKAELI SSEQAAEQNF STDNVVSGGC TECGCTALLH YHYDDGKPVP EAPFILTDSN
NKEIQGKTDK KGLCLIKDMG CGGFDMLLDE GSDDFEPPKT VINNPVIQDN PEYAALAGEY
FTLFTLLRNK GYLEYDASDS SDNEVDVDDT SFFMDVADEY EPAYKRFWEL NDQINDGSKS
LKIAINKIHT SLPAEVVSKA GDNSAVLLFC QVAVGFIPVV GQAVDIYDLG DWGWQTYRYE
ENRSDPWHWA AGSLAVIGFI PGLGDALKKS GNAIIKAMKK SDSKSIQFAI KTLRGLSNGN
LVKFLSTFEK SIREKGKDAI ALLNKIIDGL RRTIANAAKS SWIIRLMKGA FESLIDVMMK
LSKKIDEMIS WICTKVSEFI GKIVTKVSGT PRPKASKKPK VQANAGKNSG EVDNAGAKAE
VGKKNGGVSS KEGVCTKGCP IDMATGYVVD WRTDFTLNGR LPLIQKRFYH SAGLMLPGLL
GSRWRSIWDM SLELEGKQAT FTDEQYTQAV YLLPKEGEES LAAHLPEWRL TRQNKQLVMR
HVSGLIYCFD HAMGTTLLLT KISDGKGNSN HFLYDRGTLK QIVLADGQQI QVDCHHHRIS
KLTLLDSELN PIQTLARYEY DRHGQMLSCR AAPGCSFDYQ YSEEGYLLRW SDLSQTWVEH
DYDDKGRAIA SRGAEGRFSD QIRFDDANRI VYYKSAIDGI QQYYHDERNN IVRIIFPNGD
EIHNEWLDNQ LVAQSNALGE RTEFSYDAWG QVEQVIAADG SVTSYQYDDN GRLIGHINPL
GATWKYEYDV QGNLTCMSDP LNQQWFYQYT SLGQVAWVIS PEGAQTGYQY NDSGQLTEIL
PPLGEKLMLD YDVLGRLSTQ TRVSSEASVG EGVAAERKRV QRWHYQGSLP YPRAITHEDG
TQSVYDYDIE GNVTRFTDAL GHQFHYEYGA FDKMLASLDP QGAKTQYRYN GECQFEGVIN
SQQQEWCYHY NTSGQIIEER HYDGRITKFT YEGAGRISSK TAADGTSLHY FYDAVGRLTQ
KQSRDLDARI TGNTYFEYDE ASQLLKAEND HALIEFEYDE LGRRITEQLN GHRVSSQYTN
TGLRSRIERE NTEGESYHPA ADAIEFNWQL GQLKGLQIGA YHPLAFSHNQ LGQETKRSNG
LGFHLAQQHG PDGLLLNQQL IPSAHHAESL MGEGSEPFNN VHQATARGKG DSRYQHLQRS
YQYNALNQIS QIDDSHWGLS EFEHNSVGQI TQHKQYAPGV ENGTVKGAAK GTAQTGQAQQ
TQAFSYDSEQ NLTQSSQVLS ADNGNVIDFV QKRVEKALKY QQAGRVETVG DHTYRYDANG
RAVEKCTRKA GFRPQTTFYQ WDEEDQLIQV RLANGDCWHY QYDPFGRRIA KIKQSTKEQE
LRNTPSQFRY LWDGNNLVEQ QKCYADGTLA HTTQWVYEPN SFRPLAQLTQ NHGQNSQETA
DNLASELHYI VTDQAGTPRE LCTENGDIEW RGEQSLWGEH HKWRLSVQAK SKHKKYLEDA
ANDPVNCDLR YQGQVFDSET GLYYNRHRYY DPETCQYLSP DPIGMAGGLR TQAYVHNPME
WVDPFGLAAC PTAEAPQTHQ INSAVDAPEG AGTYSFRDNR GNQYTGSTNN FNSRMADHIR
DGRLPPGREV TFTQVNAPGR TEQGARRVRR FFEQKQIGLD SEGVPLPNKT SGWRSVSADK
WSTYTDGNGN IDFTNPYFN
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